DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and dnai2a

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_017213955.1 Gene:dnai2a / 563648 ZFINID:ZDB-GENE-070410-46 Length:567 Species:Danio rerio


Alignment Length:453 Identity:120/453 - (26%)
Similarity:205/453 - (45%) Gaps:51/453 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 LTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIE---RAL 151
            ::||:..|:...|         || :....:||:...::.:...|::|:.|:....|:|   :.:
Zfish    78 VSHGMNHVEGGWP---------ET-ISANNDELTLRYRKKVQKDESYQQTVIETVSVMENYKQKV 132

  Fly   152 SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW---STHFPELVVG-S 212
            .|...:|..     |:.........|...:..|..|.:..| |..||:.|   ..|  :|.|. |
Zfish   133 FEKSQVYFK-----DNRVVVKREDMASARIINVLRDPKKEK-RAATSLSWHPVDNH--KLAVAYS 189

  Fly   213 YHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNR 277
            ....:..|........:||.:..|. ||......|.::...:...|.::::||:|:|||..||.|
Zfish   190 CVEFQRGPKNMSSDSYIWNIENNKQ-PEMTLKSVSPLVCLEYNLKNISILIGGSYNGQIGYWDTR 253

  Fly   278 VQKRTPIQRTPLSAAAHTH--PVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQ 340
            ...: |:|   :||..|:|  |||.:..:.|:......|.|:||::..|.:..:|:|...|.|..
Zfish   254 SGSQ-PVQ---ISAIEHSHKDPVYKVIWLQTKIGTEAFSASTDGQVLFWDIRNMSEPTKQLILDP 314

  Fly   341 RQSK----AIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEV---YERHLGPITGIST 398
            .:||    |....||.|. |.:...::|:|.|.|...:|. |.:....:   |..||||:..:  
Zfish   315 AKSKNLNNAFGAFSMEFD-NTMPKFLVGTEQGLVVLCNRK-LETTDEPIVCTYSGHLGPVYAV-- 375

  Fly   399 HYNQLSPDFGHLFLTSSIDWTIKLWSLKDTK--PLYSFEDNSDYVMDVAWSPVHPALFAAVDGSG 461
               |.:|.|...|||.: |||.::|| :|.:  .:.|.:.::.::||..||||.||:|..|...|
Zfish   376 ---QRNPFFPKYFLTVA-DWTARIWS-EDIRLSSIMSTKYHTSHLMDGCWSPVRPAVFFTVKMDG 435

  Fly   462 RLDLWNLNQDTEVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE 524
            .||:|::....:.|:.|:.|......:......|.| :|.|.:.|.:.:..::.||.....:|
Zfish   436 TLDVWDILLKQKDPVLSLKVCDETLYSIRVKNDSPL-MCCGSQLGTVTLLKMSPNLCTLQSNE 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 12/72 (17%)
WD40 196..512 CDD:295369 96/330 (29%)
WD40 repeat 196..245 CDD:293791 13/52 (25%)
WD40 <224..523 CDD:225201 90/309 (29%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 10/38 (26%)
WD40 repeat 349..435 CDD:293791 28/90 (31%)
WD40 repeat 441..479 CDD:293791 15/37 (41%)
WD40 repeat 487..513 CDD:293791 5/25 (20%)
dnai2aXP_017213955.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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