DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and dync1i2

DIOPT Version :10

Sequence 1:NP_728323.3 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_012825730.1 Gene:dync1i2 / 407935 XenbaseID:XB-GENE-960812 Length:655 Species:Xenopus tropicalis


Alignment Length:524 Identity:285/524 - (54%)
Similarity:371/524 - (70%) Gaps:48/524 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPP 87
            |:.|.:..|...:..|:||:.|||:|||        .:||.|.:||::|.               
 Frog   154 PIKLGMSKVTQVDFAPRETVSYTKETQT--------PILAQDNEGDEDEE--------------- 195

  Fly    88 GYLTHGLPTVKDVAPAITPLE-----IKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVI 147
                      :.|||....::     .|||.:.:...:||:||:||.||.||.|..|...:.|::
 Frog   196 ----------ETVAPKAVAIQEEDKPEKKEEKTEAPPHELTEEEKQQIIHSEEFVSFFDHSTRIV 250

  Fly   148 ERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGS 212
            ||||||:|:|:.||.|....|:..:.::.|:||.||.|:||||||:|.::.:|||:.:|||:|.|
 Frog   251 ERALSEHVNIFFDYSGRDLEEKEGEIQAGAKLSFNRQFFDERWSKHRVVSCLDWSSQYPELLVAS 315

  Fly   213 YHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNR 277
            |:|||::|:|||||.:|||.|:||.|||.||||||||||..||:|:|||::||||||||||||||
 Frog   316 YNNNEDAPHEPDGVALVWNMKYKKMTPEYVFHCQSAVMSAAFARFHPNLVVGGTYSGQIVLWDNR 380

  Fly   278 VQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQ 342
            ..||||:||||||||||||||||:.:||||||||:||||:|||:|||||||||||||::||..:|
 Frog   381 SNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSQPQDSMELVHKQ 445

  Fly   343 SKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDF 407
            |||:|:|.|:||..::|:.|:|||:|.||:|.|||.::|::|::|.|.||||||..|....:.||
 Frog   446 SKAVAVTCMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHSAVGAVDF 510

  Fly   408 GHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDT 472
            .|||:|||.|||:|||:.|:.|||||||||||||.||.|||.||||||.|||.|||||||||.||
 Frog   511 SHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGRLDLWNLNNDT 575

  Fly   473 EVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIKM 527
            |||.|||.|.|.||||||.||.||..:.:|:..|::::|||.|.:|.|..|          ||..
 Frog   576 EVPTASITVEGNPALNRVRWTHSGREIAVGNSEGEIFIYDVGEQIAVPRNDEWTRFARTLAEINA 640

  Fly   528 NQSD 531
            |::|
 Frog   641 NRAD 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_728323.3 Dynein_IC2 21..51 CDD:463291 11/27 (41%)
WD40 196..512 CDD:475233 212/315 (67%)
WD40 repeat 196..245 CDD:293791 29/48 (60%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 31/38 (82%)
WD40 repeat 349..435 CDD:293791 47/85 (55%)
WD40 repeat 441..479 CDD:293791 30/37 (81%)
WD40 repeat 487..513 CDD:293791 11/25 (44%)
dync1i2XP_012825730.1 Dynein_IC2 152..182 CDD:463291 12/35 (34%)
WD40 repeat 299..346 CDD:293791 27/46 (59%)
WD40 <327..430 CDD:441893 81/102 (79%)
WD40 397..>622 CDD:475233 146/224 (65%)
WD40 repeat 451..498 CDD:293791 23/46 (50%)
WD40 repeat 506..538 CDD:293791 20/31 (65%)
WD40 repeat 544..582 CDD:293791 30/37 (81%)
WD40 repeat 590..616 CDD:293791 11/25 (44%)

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