DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdic3 and CG13074

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_648835.1 Gene:CG13074 / 39760 FlyBaseID:FBgn0036567 Length:451 Species:Drosophila melanogaster


Alignment Length:454 Identity:79/454 - (17%)
Similarity:146/454 - (32%) Gaps:154/454 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DSEEANDERSHAR-------LSLNRVFYDER----WSKNRC-------------ITSMDWST--- 203
            |:.....|:.|..       :|...|.||||    |.:..|             :..:..|.   
  Fly    41 DAATGTQEKLHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLTMSQCRL 105

  Fly   204 -------HFPELVVGSYHNNE--------ESPNEPDGVVMVWNT-------------KFKKSTPE 240
                   .:.:|::|...|::        .:.|.|   |:|..|             :.|...|:
  Fly   106 EEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAP---VLVATTVAPHDDWCEHVDQQLKLFVPQ 167

  Fly   241 -------------DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW--------DNRV--QKRT 282
                         .....:|.:.|.|...||..:..|.|..|::.:|        |:.|  ::..
  Fly   168 RMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNKTMFAGSTMDGELFIWLYEQARGSDSSVDIKQLY 232

  Fly   283 PIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIA 347
            .:..|..:|.|...|          ..|.:::..::|.:..|.|..    |..|:.:......::
  Fly   233 SVSSTQGAAVALDWP----------REHLLLACFANGSVRQWDLSR----QMALDWEYTLPATVS 283

  Fly   348 ITSMAFPANEINSLVMGSEDGYVYSASRHGLR-SGVNEV----YERHLGPI-TGISTHYNQLSPD 406
            ....|.....::..|:|:.||.||.....|.: :.:.::    ..||...: |.:.|...     
  Fly   284 SEPTAMVTLGLDDFVVGTNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEME----- 343

  Fly   407 FGHLFLTSS-------------IDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVD 458
             |:||:.|.             :|                 ||.:..::.:. .|....:..:.|
  Fly   344 -GNLFVLSCDLSGQAFYHDMRLVD-----------------EDMAQLIVQIP-LPFKNVIACSRD 389

  Fly   459 GS--------GRLDLWNLNQDTEVPIASIVVAGAPALNRVS----WTPSGLHVCIGDEAGKLYV 510
            |:        |.|:.:.::......:.. .:.|..:|.|.|    |..:||:   |||....||
  Fly   390 GNIIFCPANDGSLEYYRVSDGAHAHVKG-GLRGKGSLIRSSDNGRWLIAGLY---GDEFQIFYV 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 3/11 (27%)
WD40 196..512 CDD:295369 68/400 (17%)
WD40 repeat 196..245 CDD:293791 11/92 (12%)
WD40 <224..523 CDD:225201 62/354 (18%)
WD40 repeat 251..289 CDD:293791 11/47 (23%)
WD40 repeat 298..337 CDD:293791 5/38 (13%)
WD40 repeat 349..435 CDD:293791 17/104 (16%)
WD40 repeat 441..479 CDD:293791 5/45 (11%)
WD40 repeat 487..513 CDD:293791 11/28 (39%)
CG13074NP_648835.1 WD40 repeat 189..234 CDD:293791 10/44 (23%)
WD40 repeat 242..275 CDD:293791 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12442
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.110

Return to query results.
Submit another query.