DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and CG10859

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001285898.1 Gene:CG10859 / 34756 FlyBaseID:FBgn0032520 Length:627 Species:Drosophila melanogaster


Alignment Length:461 Identity:98/461 - (21%)
Similarity:175/461 - (37%) Gaps:77/461 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 KEVNELSEE-----QKQMIILSENFQRFVVRAGRVIERAL---SEN--VDIYTDY-------IGG 164
            ||||.:.||     :|::    |....:.:...:::..|:   |.|  |:||.|:       :|.
  Fly    86 KEVNIMDEESTMRYRKKV----ERDDSWGIEVNQLMHAAMDISSANNAVNIYEDFFVDLPEDLGR 146

  Fly   165 GDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN------------- 216
            |.|.:.....:|       ||:| .|..:|.:.:.:|..:.|...:..|.|.             
  Fly   147 GISMKIAARGTH-------VFHD-LWIPSRRLMTCEWLNNDPNQFLLFYSNRMSLTPDYTKQLNT 203

  Fly   217 -EESPNEPDGVVMVWNTKFKKSTPEDVFHCQS----AVMSTCFAKFNPNLILGGTYSGQIVLWDN 276
             .:..|:......:||.   ........|..|    .|...|..  :.:.::||...||:..|..
  Fly   204 LPDFGNDNPHAFYIWNL---DDATRPAAHYDSRRVVRVAKVCLR--DESYMVGGLQEGQVGFWLT 263

  Fly   277 RVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSL--------DMLSQPQ 333
            ..| ..|....||. |.|......:..|.::......|.|.||.:..|..        ::|::| 
  Fly   264 ENQ-GGPKSMCPLE-ACHREATTAICWVHSKLNTEFYSGSLDGSIKYWDTRDLLMPVHEVLAEP- 325

  Fly   334 DTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGL--RSGVNEVYERHLGPITGI 396
            |...:|.||. |..:|.:.|........:..::.||::..:|.|.  :..:...|:...|||..:
  Fly   326 DPQTVQNRQD-AHGVTFLEFEYTIPVRFIFCTDMGYLFVGNRKGTTPQDTIVAAYQLFAGPIRCV 389

  Fly   397 STHYNQLSPDFGHLFLTSSIDWTIKLWS--LKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDG 459
                 ..:|.|...||... ||.:::||  :|:....:.|. ..:.::..|||....:||...|.
  Fly   390 -----MRNPFFVKNFLVVG-DWRVRIWSEEVKNCPSTFYFR-RPNQLLSGAWSTGRCSLFCIGDN 447

  Fly   460 SGRLDLWNLNQDTEVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE 524
            .|.|:.|:|....:.||  :.:....|:..:.:.|.|..:.:....|...:..:.|.:...:..|
  Fly   448 MGNLEFWDLLMSHKRPI--LTIKYKYAVTHLVFKPDGTMLTVSLANGDCLMLRLEEGMRSATNKE 510

  Fly   525 IKMNQS 530
            ..:..|
  Fly   511 KSLMMS 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 19/77 (25%)
WD40 196..512 CDD:295369 71/345 (21%)
WD40 repeat 196..245 CDD:293791 7/62 (11%)
WD40 <224..523 CDD:225201 67/314 (21%)
WD40 repeat 251..289 CDD:293791 8/37 (22%)
WD40 repeat 298..337 CDD:293791 9/46 (20%)
WD40 repeat 349..435 CDD:293791 19/89 (21%)
WD40 repeat 441..479 CDD:293791 12/37 (32%)
WD40 repeat 487..513 CDD:293791 3/25 (12%)
CG10859NP_001285898.1 WD40 <245..310 CDD:295369 16/66 (24%)
WD40 261..>512 CDD:225201 58/263 (22%)
WD40 279..492 CDD:295369 49/223 (22%)
WD40 repeat 284..332 CDD:293791 9/48 (19%)
WD40 repeat 386..422 CDD:293791 10/41 (24%)
WD40 repeat 429..454 CDD:293791 8/24 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435284
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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