DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and DYNC1I1

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_004402.1 Gene:DYNC1I1 / 1780 HGNCID:2963 Length:645 Species:Homo sapiens


Alignment Length:517 Identity:279/517 - (53%)
Similarity:358/517 - (69%) Gaps:41/517 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYL 90
            |.|..|...:..|:|.:.|:|:|||        .:....::.|:|:..:.....|..|:|.    
Human   148 LGVSKVTQVDFLPREVVSYSKETQT--------PLATHQSEEDEEDEEMVESKVGQDSELE---- 200

  Fly    91 THGLPTVKDVAPAITPLEIKKETEVKK-EVNELSEEQKQMIILSENFQRFVVRAGRVIERALSEN 154
                             ...|:.|||: ...||:||:||.|:.||.|..|..|..|||||||:|:
Human   201 -----------------NQDKKQEVKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAED 248

  Fly   155 VDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEES 219
            .||:.||.|....|:..|.::.|.||.||.||||.|||:|.:|.||||..:|||:|.||:|||::
Human   249 SDIFFDYSGRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYNNNEDA 313

  Fly   220 PNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPI 284
            |:|||||.:|||.||||:|||.||||||:|||.|||:|:|||::||||||||||||||..:|||:
Human   314 PHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPV 378

  Fly   285 QRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAIT 349
            ||||||||||||||||:.:||||||||:|::|:|||:|||||||||.||:::||...:||.:|:|
Human   379 QRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKPVAVT 443

  Fly   350 SMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTS 414
            .||||..::|:.|:|||:|.||:|.|||.::|:.||:|.|.||:|||:.|......||.|||:||
Human   444 GMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTS 508

  Fly   415 SIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPIASI 479
            |.|||:|||:.|..|||||||||:|||.||.||||||||||.|||.|||||||||.|||||.||:
Human   509 SFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASV 573

  Fly   480 VVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIKMNQSD 531
            .:.||.|||||.|..:|..|.:||..|:::||||.| ||.|..|          ||:.|::|
Human   574 AIEGASALNRVRWAQAGKEVAVGDSEGRIWVYDVGE-LAVPHNDEWTRFARTLVEIRANRAD 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403 9/24 (38%)
NtpH 108..>178 CDD:225368 31/70 (44%)
WD40 196..512 CDD:295369 208/315 (66%)
WD40 repeat 196..245 CDD:293791 32/48 (67%)
WD40 <224..523 CDD:225201 198/298 (66%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..435 CDD:293791 48/85 (56%)
WD40 repeat 441..479 CDD:293791 31/37 (84%)
WD40 repeat 487..513 CDD:293791 12/25 (48%)
DYNC1I1NP_004402.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58
Interaction with DCTN1. /evidence=ECO:0000250 2..123
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 95..125
Dynein_IC2 147..173 CDD:371592 10/32 (31%)
Interaction with DYNLT1. /evidence=ECO:0000269|PubMed:27502274 147..163 4/14 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..221 16/80 (20%)
WD40 283..606 CDD:392136 212/322 (66%)
WD 1 285..334 31/48 (65%)
WD40 repeat 291..337 CDD:293791 30/45 (67%)
WD 2 338..378 30/39 (77%)
WD40 repeat 346..385 CDD:293791 29/38 (76%)
WD 3 387..428 31/40 (78%)
WD40 repeat 393..434 CDD:293791 28/40 (70%)
WD 4 437..477 21/39 (54%)
WD40 repeat 442..481 CDD:293791 20/38 (53%)
WD 5 482..527 25/44 (57%)
WD40 repeat 488..529 CDD:293791 24/40 (60%)
WD 6 530..570 33/39 (85%)
WD40 repeat 535..573 CDD:293791 31/37 (84%)
WD 7 576..615 21/39 (54%)
WD40 repeat 581..607 CDD:293791 12/25 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165140632
Domainoid 1 1.000 377 1.000 Domainoid score I864
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 600 1.000 Inparanoid score I957
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm8531
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1211.910

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