DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and Dync1i1

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_006505045.1 Gene:Dync1i1 / 13426 MGIID:107743 Length:645 Species:Mus musculus


Alignment Length:521 Identity:281/521 - (53%)
Similarity:357/521 - (68%) Gaps:49/521 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYL 90
            |.|..|...:..|:|.:.|:|:|||.         ||.....:|||..                 
Mouse   148 LGVSKVTQVDFLPREVVSYSKETQTP---------LATHQSEEDEEDE----------------- 186

  Fly    91 THGLPTVKDVAPAI---TPLEIKKETEVKKEV--NELSEEQKQMIILSENFQRFVVRAGRVIERA 150
                   :.|.|.|   :.||.:::.:..||.  .||:||:||.|:.||.|..|..|..||||||
Mouse   187 -------EMVEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERA 244

  Fly   151 LSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHN 215
            |:|:.||:.||.|....|:..|.::.|.||.||.||||.|||:|.:|.||||..:|||:|.||.|
Mouse   245 LAEDSDIFFDYSGRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSN 309

  Fly   216 NEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQK 280
            ||::|:|||||.:|||.||||:|||.||||||:|||.|||:|:|||::||||||||||||||..:
Mouse   310 NEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHR 374

  Fly   281 RTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKA 345
            |||:||||||||||||||||:.:||||||||:|::|:|||:|||||||||.||:::||...:||.
Mouse   375 RTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKP 439

  Fly   346 IAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHL 410
            :|:|.||||..::|:.|:|||:|.||:|.|||.::|:.||:|.|.||:|||:.|......||.||
Mouse   440 VAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHL 504

  Fly   411 FLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVP 475
            |:|||.|||:|||:.|..|||||||||:|||.||.||||||||||.|||.|||||||||.|||||
Mouse   505 FVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVP 569

  Fly   476 IASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIKMNQS 530
            .||:.:.||.|||||.|...|..|.:||..|::::|||.| ||.|..|          ||:.|::
Mouse   570 TASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGE-LAVPHNDEWTRFARTLVEIRANRA 633

  Fly   531 D 531
            |
Mouse   634 D 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403 9/24 (38%)
NtpH 108..>178 CDD:225368 30/71 (42%)
WD40 196..512 CDD:295369 207/315 (66%)
WD40 repeat 196..245 CDD:293791 32/48 (67%)
WD40 <224..523 CDD:225201 197/298 (66%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..435 CDD:293791 48/85 (56%)
WD40 repeat 441..479 CDD:293791 31/37 (84%)
WD40 repeat 487..513 CDD:293791 11/25 (44%)
Dync1i1XP_006505045.1 Dynein_IC2 147..173 CDD:371592 9/24 (38%)
WD40 283..606 CDD:392136 211/322 (66%)
WD40 repeat 291..337 CDD:293791 30/45 (67%)
WD40 repeat 346..385 CDD:293791 29/38 (76%)
WD40 repeat 393..434 CDD:293791 28/40 (70%)
WD40 repeat 442..481 CDD:293791 20/38 (53%)
WD40 repeat 488..529 CDD:293791 24/40 (60%)
WD40 repeat 535..573 CDD:293791 31/37 (84%)
WD40 repeat 581..607 CDD:293791 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830603
Domainoid 1 1.000 379 1.000 Domainoid score I846
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 638 1.000 Inparanoid score I823
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm8761
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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