DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and dnai4

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001106504.1 Gene:dnai4 / 100127694 XenbaseID:XB-GENE-5890871 Length:795 Species:Xenopus tropicalis


Alignment Length:665 Identity:150/665 - (22%)
Similarity:256/665 - (38%) Gaps:176/665 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FLRSTY--STLSGGKKQPLNLSVYNVQATNI------------------PPKETL-----VYTKQ 47
            |.|||:  ||:|...|:..:|:.| ::.|..                  |.:|.|     ::...
 Frog   145 FTRSTFGGSTVSRSSKETESLTEY-IEDTGFKRELASLSEIQGKQHEMQPIEEDLDKIINIFITD 208

  Fly    48 TQT----------TSTGGGNGDV----------LAFDAQGDDE--ESSLQNLGNGFTSK------ 84
            |:|          ||:...|.|:          |..|..|:|:  |..:|.......||      
 Frog   209 TETLWLLDMPPALTSSDSENADLIRVRNQAYEDLCKDKVGNDKYIERMMQTFSGAPKSKEVQCDR 273

  Fly    85 --------------LPPGYLTHGLPTVKDVAPAITPLEIK-------KETEVKKEVNEL------ 122
                          |...|.:....|||:.....|  |.|       .|:...:.||.|      
 Frog   274 IILEDIGVTASVWDLYDSYYSPESLTVKETVDRAT--ESKNISTSRSSESRGTRSVNSLGRADSF 336

  Fly   123 ------------------SEEQKQMIILSENFQR---FVVRAGRVIERALSENVDIYTDYIGGGD 166
                              :|...:.|:..|.||:   |:.|.  |:|......:..|.......|
 Frog   337 SSSATDIEGLPLARIPDEAEPDSEEILKLEKFQQDLFFMERV--VVENTFQSRLAAYRQLPVIAD 399

  Fly   167 SEEANDERSHARL-----SLNRVFYDERWS------KNRCITSMDWSTHFPELVV---GSYHNNE 217
            .||..|:.|....     ||||:     ||      |...::|:.|:....:|:.   |.:...|
 Frog   400 HEEDEDKISAVSSNIMSPSLNRL-----WSFACDVTKGHNVSSISWNKKNSDLLAVGYGQFGFTE 459

  Fly   218 ESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRT 282
            :.    .|:...|:.| ....||.:|||:..|.:..|:..:|||:..|.|:|.:.:::.:..:..
 Frog   460 QK----GGMACCWSLK-NIMWPERIFHCECGVTAVDFSAVHPNLLAVGMYNGTVAIYNVQNNEDF 519

  Fly   283 PIQRTPLSAAAHTHPVYCLQMV-------GTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ- 339
            |:..:..:...||.||:.|:.:       |......::|:.:||::..|.:.......|.::|: 
 Frog   520 PVLDSSDNPNKHTSPVWQLKWIEHDRGNLGDDKGEILVSVCADGRITRWHIRKGLDCNDLMKLKR 584

  Fly   340 -----------QRQSKAIAITSMAFPA-------NEINSLVMGSEDGYVYSASRHGLRSGVNE-- 384
                       :::.|..|..|...|.       .:.|..:.|:|:|:::..|     ...||  
 Frog   585 TGSEKSKKSSNEKEKKGEAFISRQAPGMCFDFLPKDSNIYLAGTEEGHIHKCS-----CSYNEQF 644

  Fly   385 --VYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWS 447
              .|..|.||:..|:  ::...||   :||:.|.||.|.||......|:.:|.:.::.|.|:.||
 Frog   645 LDTYRGHKGPVYKIA--WSPFCPD---VFLSCSADWCIHLWQQDVLSPILTFSNTTNAVYDIMWS 704

  Fly   448 PVHPALFAAVDGSGRLDLWNLNQDTEVPIASIVVAGAPA--LNRVSWTPSGLHVCIGDEAGKLYV 510
            |....:|.||. ..|:::|:|...|..|:  ||....|.  |..:.:..:...|.|||..|::.|
 Frog   705 PSSALMFGAVT-ENRVEIWDLGTSTIDPL--IVNEANPGVKLTSILFAKNTNCVLIGDSDGQVNV 766

  Fly   511 YDVAENLAQPSRDEI 525
            |:: .|::.....|:
 Frog   767 YEL-RNVSSSKDSEV 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403 8/60 (13%)
NtpH 108..>178 CDD:225368 21/103 (20%)
WD40 196..512 CDD:295369 85/350 (24%)
WD40 repeat 196..245 CDD:293791 11/51 (22%)
WD40 <224..523 CDD:225201 82/330 (25%)
WD40 repeat 251..289 CDD:293791 8/37 (22%)
WD40 repeat 298..337 CDD:293791 8/45 (18%)
WD40 repeat 349..435 CDD:293791 25/96 (26%)
WD40 repeat 441..479 CDD:293791 13/37 (35%)
WD40 repeat 487..513 CDD:293791 8/25 (32%)
dnai4NP_001106504.1 WD40 359..782 CDD:225201 109/448 (24%)
WD40 431..768 CDD:295369 86/354 (24%)
WD40 repeat 435..480 CDD:293791 10/49 (20%)
WD40 repeat 487..523 CDD:293791 8/35 (23%)
WD40 repeat 613..650 CDD:293791 8/41 (20%)
WD40 repeat 656..693 CDD:293791 13/41 (32%)
WD40 repeat 698..736 CDD:293791 15/40 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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