DRSC/TRiP Functional Genomics Resources

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Protein Alignment HIP and TIC40

DIOPT Version :10

Sequence 1:NP_570074.3 Gene:HIP / 318211 FlyBaseID:FBgn0260484 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_197165.1 Gene:TIC40 / 831524 AraportID:AT5G16620 Length:447 Species:Arabidopsis thaliana


Alignment Length:397 Identity:79/397 - (19%)
Similarity:127/397 - (31%) Gaps:131/397 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQFN--GGSAGGKCPF--- 62
            |:..|.:||  ||.:..|::  |.:|....|              ..|||  |..:|...||   
plant   122 FSYVTSNLK--KYAMQTAMK--TMMNQMNTQ--------------NSQFNNSGFPSGSPFPFPFP 168

  Fly    63 -------------GGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNY 114
                         ...:||..:..|...|.....|....|..|:|:|...|:...|...:...||
plant   169 PQTSPASSPFQSQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNY 233

  Fly   115 S-KKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNA 178
            : :..:.||..:.|.                    ::...|:|..|:   .|..:.|..:.:..|
plant   234 AFEDISPEETTKESP--------------------FSNYAEVSETNS---PKETRLFEDVLQNGA 275

  Fly   179 CIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKI 243
            ...:...|.|:...|..|....|                       ...|..|.:.| .|..:|:
plant   276 GPANGATASEVFQSLGGGKGGPG-----------------------LSVEALEKMME-DPTVQKM 316

  Fly   244 EQHRLKQERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSG------------------- 289
            ....|.:|.|..| ..|...::.:..::.|:..|..||  |||:..                   
plant   317 VYPYLPEEMRNPE-TFKWMLKNPQYRQQLQDMLNNMSG--SGEWDKRMTDTLKNFDLNSPEVKQQ 378

  Fly   290 ----------------GNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITKYASNPK---IYNL 335
                            .||      |:..|..:|.|.||:.:...||.||.||.::.:   ::|.
plant   379 FNQIGLTPEEVISKIMENP------DVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNK 437

  Fly   336 IKKIVPG 342
            |.::.||
plant   438 ISQLFPG 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HIPNP_570074.3 Hip_N 10..47 CDD:271228 8/36 (22%)
TPR repeat 126..154 CDD:276809 1/27 (4%)
NlpI <139..269 CDD:443815 21/129 (16%)
TPR repeat 159..189 CDD:276809 5/29 (17%)
TPR repeat 194..222 CDD:276809 2/27 (7%)
STI1 299..336 CDD:128966 13/39 (33%)
TIC40NP_197165.1 GerD <302..414 CDD:444606 25/121 (21%)
STI1 386..438 CDD:436075 15/57 (26%)

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