Protein Alignment HNRNPAB and sqd-1

DIOPT Version :9

• Sequence 1: NP_112556.2
• Gene: HNRNPAB / 3182
• HGNCID: 5034
• Length: 332
• Species: Homo sapiens
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 313
• Identity: 98/313 - (31%)
• Similarity: 151/313 - (48%)
• Gaps: 47/313 - (15%)

Human    43 ATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 107
            ||....:||.:....:..:::|..||. |:||||:|.:.:.:||..:||::|||....:|.|...
 Worm     3 ATDNKINGNASETIKENGHSTKGNEDK-KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66

Human   108 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIRE 172
            ||||||.|:.|......:..|..:|..:.|:.::.|.|.:.:.   ||:|||||..:.:|:.:|.
 Worm    67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSREN---KKVFVGGLPSDYSEQDLRS 128

Human   173 YFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
            :|.:||:::.||.|.|.:...||.|.||.|:|||...|...:...|....:|::|.|.|    |.
 Worm   129 HFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVP----QG 189

Human   238 QQY-GSGGRGNRNRGNRGSGGGGGGGGQSQSWNQ-----------GYGNYWNQGY---------- 280
            ::: |:.||....||..|..||....|....|.|           .:|:::..||
 Worm   190 KRFPGAQGRMPGGRGMYGGRGGNNNSGWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAAHHN 254

Human   281 --GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
              |..||||.||       ..:.|...|:||.|     .:..|:|   ||.:|
 Worm   255 NSGSSQGYGSGY-------QSFAGNNSGFDYQQ-----AQGARQG---NNGQP 292

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HNRNPAB	NP_112556.2	CBFNT	1..70	CDD:311868	7/26 (27%)
		RRM1_hnRNPAB	66..145	CDD:410151	29/78 (37%)
		RRM2_hnRNPAB	150..229	CDD:409997	29/78 (37%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	27/73 (37%)
		RRM_SF	111..185	CDD:418427	28/73 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	59	1.000	Domainoid score	I7734
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG45859
OrthoDB	1	1.010	-	-		D496221at33208
OrthoFinder	1	1.000	-	-		FOG0001417
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4769
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	7	6.960