DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbm13 and mak16

DIOPT Version :9

Sequence 1:NP_001285026.1 Gene:Rbm13 / 31818 FlyBaseID:FBgn0030067 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_593145.1 Gene:mak16 / 2541944 PomBaseID:SPAC222.06 Length:302 Species:Schizosaccharomyces pombe


Alignment Length:344 Identity:148/344 - (43%)
Similarity:206/344 - (59%) Gaps:45/344 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQHDDVVWSIINKSFCSHKVKTDTRTFCRHEYNLTGLCTRRTCPLANSQYATVREEKGIIYLFIK 65
            ||.|:|:|.::...|||:::|.:.:.|||:|||:||||.|::||||||:||||||:.|.:||::|
pombe     1 MQQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLCNRQSCPLANSRYATVREDNGKLYLYMK 65

  Fly    66 TAERAHMPSKLWERIKLSRNFEKAIEQINENLVFWPKYMIAKNKQRFLKITQYLIRMRRLKLRRQ 130
            |.||||.|||||:|||||:|:.||:|||::.|::||...|.:.|||..::||||::.|||.|:.|
pombe    66 TIERAHFPSKLWQRIKLSKNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQ 130

  Fly   131 KLIVPLSTKIERREARREEKALVAAKIDNHIEKALMDRLKNGTYRD-IYNFSQTAFNKALEAERV 194
            ..::|:..|...|||.||.|||:|||::.:|||.|:.|||:|.|.| ..|.::..:||.|.|   
pombe   131 PALIPIKPKQAHREASRERKALIAAKLEKNIEKELVKRLKSGVYGDQPLNVNEEIWNKVLAA--- 192

  Fly   195 DEDDEEELDDEDENEEQLEREMEVDGDDSREAEEVQRSLLDEEFVEADTDDEEEDDDDDDDDDED 259
                .|.|.||.|.||  |||         |||        .|||..|.|:||..|.:|....:.
pombe   193 ----REGLIDEGEEEE--ERE---------EAE--------LEFVSDDEDEEEISDLEDWLGSDQ 234

  Fly   260 DYDSDSGKREEVEVGSDFEESDEDDDADADDIEETKVPAKKTASKAKKDKKSPAGNSRRSRSKPK 324
            ..::...:.||    |...|||||:|.|             ...|.:|.|...|..||:.|: |.
pombe   235 SMETSESEEEE----SSESESDEDEDED-------------NKGKIRKRKTDDAKKSRKKRA-PH 281

  Fly   325 LQLEYEYEVEKEAQRQMRH 343
            :.:|||.|.|.|....::|
pombe   282 IHIEYEQERENEKIPAVQH 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbm13NP_001285026.1 PLN00040 1..225 CDD:215038 111/224 (50%)
Ribosomal_L28e 6..115 CDD:280030 61/108 (56%)
Mak16 139..241 CDD:282698 43/102 (42%)
mak16NP_593145.1 MAK16 2..301 CDD:227458 147/343 (43%)
Ribosomal_L28e 6..115 CDD:280030 61/108 (56%)
Mak16 137..>195 CDD:282698 27/64 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 157 1.000 Domainoid score I1038
eggNOG 1 0.900 - - E1_COG5129
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 261 1.000 Inparanoid score I747
OMA 1 1.010 - - QHG54003
OrthoFinder 1 1.000 - - FOG0004909
OrthoInspector 1 1.000 - - oto102148
orthoMCL 1 0.900 - - OOG6_102084
Panther 1 1.100 - - LDO PTHR23405
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R678
SonicParanoid 1 1.000 - - X3461
TreeFam 1 0.960 - -
1312.860

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