DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9D and Rab13

DIOPT Version :10

Sequence 1:NP_727432.1 Gene:Rab9D / 318149 FlyBaseID:FBgn0067052 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_112354.1 Gene:Rab13 / 81756 RGDID:620880 Length:203 Species:Rattus norvegicus


Alignment Length:167 Identity:81/167 - (48%)
Similarity:105/167 - (62%) Gaps:2/167 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFADWRMGRMLQVWDTSDD 68
            ||:.||::|:||||||||||::||:::.|.:.:.||:|:|.:..:||....|:  .||||||:..
  Rat     5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRI--KLQVWDTAGQ 67

  Fly    69 ERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQVS 133
            ||||.:.....|.|.||:||||||..|||:||..|||.|:......|..||:|||.|....|:|.
  Rat    68 ERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQ 132

  Fly   134 MAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170
            ..|....|....|.|.|.||||..||.:.|||||.||
  Rat   133 REQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DNP_727432.1 Rab 8..167 CDD:206640 75/158 (47%)
Rab13NP_112354.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 80/166 (48%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 4/13 (31%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 6/16 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..203
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.