DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rab9D and Rab30

DIOPT Version :9

Sequence 1:	NP_727432.1	Gene:	Rab9D / 318149	FlyBaseID:	FBgn0067052	Length:	197	Species:	Drosophila melanogaster
Sequence 2:	NP_083770.2	Gene:	Rab30 / 75985	MGIID:	1923235	Length:	203	Species:	Mus musculus

Alignment Length:	175	Identity:	67/175 - (38%)
Similarity:	104/175 - (59%)	Gaps:	2/175 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MSQYDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFADWRMGRMLQVWDT 65
            |..||..|||:|:|::|||||||:.||:...|.....:|:|:|....:||....::  .||:|||
Mouse     3 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV--KLQIWDT 65

  Fly    66 SDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLLVGNKSDDPNHR 130
            :..|||:.:..:..|||:.::|.||||..:||:.:..|::||.:...:|||.:|||||.|....|
Mouse    66 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 130

  Fly   131 QVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDIYTYRR 175
            :||..:...::..|.:.:.|.|||...||..:|..||..:.:..|
Mouse   131 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 175

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rab9D	NP_727432.1	RAB	8..171	CDD:197555	63/162 (39%)
Rab9D	NP_727432.1	Rab	8..167	CDD:206640	61/158 (39%)
Rab30	NP_083770.2	Rab30	3..171	CDD:133314	66/169 (39%)
Rab30	NP_083770.2	Effector region. /evidence=ECO:0000250	38..46		2/7 (29%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1149105at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010