DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9D and Rab23

DIOPT Version :9

Sequence 1:NP_727432.1 Gene:Rab9D / 318149 FlyBaseID:FBgn0067052 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster


Alignment Length:190 Identity:49/190 - (25%)
Similarity:87/190 - (45%) Gaps:19/190 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLD--RRECSVEFADWRMGRMLQVWDTSDDERF 71
            |::::|:.||||:.::.|:....||..::.|:|:|  .|:..::..|.|    :.:|||:..|.|
  Fly    39 KVVIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVR----IMLWDTAGQEEF 99

  Fly    72 KLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQVSMAQ 136
            ..:.....|.|...:||:..|...||..|..|.:::...| :::..::|.||.|......|:..:
  Fly   100 DCITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENEC-NEIPTVIVQNKIDLIEQAVVTADE 163

  Fly   137 GFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDIY-----TYRRVHYN-------PFSLT 184
            ....|...:......|.|...||..:|..||...:     :|.:|..|       |:|.|
  Fly   164 VETLAKLLNCRLIRTSVKEDINVASVFRYLATKCHQLMTQSYDQVAGNQQNSSHPPYSST 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DNP_727432.1 RAB 8..171 CDD:197555 43/163 (26%)
Rab 8..167 CDD:206640 41/159 (26%)
Rab23NP_649574.1 Ras 50..199 CDD:278499 38/153 (25%)
Rab23_like 50..197 CDD:133306 38/151 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454275
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.