DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab9D and rab13

DIOPT Version :10

Sequence 1:NP_727432.1 Gene:Rab9D / 318149 FlyBaseID:FBgn0067052 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_958486.1 Gene:rab13 / 373105 ZFINID:ZDB-GENE-030826-30 Length:200 Species:Danio rerio


Alignment Length:168 Identity:77/168 - (45%)
Similarity:106/168 - (63%) Gaps:2/168 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QYDNPFKIILLGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVEFADWRMGRMLQVWDTSD 67
            :||..||::|:||||||||||::||:::.|.:.:.||:|:|.:..::|....::  .||||||:.
Zfish     4 KYDFLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIEVEGKKV--KLQVWDTAG 66

  Fly    68 DERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVIVLLVGNKSDDPNHRQV 132
            .||||.:.....|.|.||:||||||..||::||..|||.|:......|..:|:|||.|....|:|
Zfish    67 QERFKTITTAYYRGAMGIILVYDITDEKSYENIQNWMKSIKENASAGVSRMLLGNKCDIEAKRKV 131

  Fly   133 SMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDI 170
            |...|...|....|.|.|.||||..||.:.|:|||.||
Zfish   132 SKETGEKLAKEHGIRFFETSAKSSINVEESFTSLARDI 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9DNP_727432.1 Rab 8..167 CDD:206640 71/158 (45%)
rab13NP_958486.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 76/166 (46%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 4/13 (31%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 6/16 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.