DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32668 and pkp1b

DIOPT Version :9

Sequence 1:NP_727502.1 Gene:CG32668 / 318147 FlyBaseID:FBgn0052668 Length:863 Species:Drosophila melanogaster
Sequence 2:XP_001338299.2 Gene:pkp1b / 797838 ZFINID:ZDB-GENE-030131-417 Length:736 Species:Danio rerio


Alignment Length:720 Identity:148/720 - (20%)
Similarity:239/720 - (33%) Gaps:235/720 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LLRR--RSRSETRPQANPAEMAKQPADSDKSDR-----QQQLAKHHQMRHHQPHASEQSLNKLGL 61
            :||:  .|||.:..|.|        ::|.:.||     |..::...:..:...:.|.:|...||.
Zfish   104 ILRKSTNSRSSSGQQVN--------SNSGRFDRSIYGFQGSVSTQQKTSNQLYNKSTRSAPDLGF 160

  Fly    62 --VSSGTSGMGRR-KTSAELISE----AKMFLGESVNAVPLLATGGARLVS--TRRPITPRESGR 117
              .::|.|..|:| :||.:....    ::|......|...|:....:..|:  :|||.:.:.:|.
Zfish   161 QPTTNGMSSTGQRSQTSRQTFQRWEKGSQMPSSSYSNGTTLVRMSNSNQVNAVSRRPSSLQSNGE 225

  Fly   118 VLYGKVALAGRPPSAFSMRYLQNEKPSTPRQLPALSGSVSATPMPTRNGALLCQSSTETLIELLK 182
            .....:    |...|.....:..|||.:..               |...|:.|.|||:..::|  
Zfish   226 SRMSMI----RSGQAKDFSGMTLEKPVSDM---------------TMRDAVDCLSSTDENVQL-- 269

  Fly   183 QHSGLKDCSDETVQHINAILQELYTRVRKQERNYKRGFILGGLYGLVECTSPRVLLAVARVVLAL 247
                   |....:||     ........|||....:|..|  |..|:..:||:|...||   .||
Zfish   270 -------CGASYIQH-----STFNDDKAKQEVLTLKGLPL--LVDLLGSSSPQVQETVA---AAL 317

  Fly   248 R-------------------------------VTGSNLTGACKLIFKVARHEQHDALFHEHDVLE 281
            |                               .|..:|||   |::.::   ..|.|  :.|:|.
Zfish   318 RNAIFKNLPNKQEVQRSGGIKQAAQLLGDANTETQKHLTG---LLWNLS---SEDGL--KPDLLR 374

  Fly   282 LLIDGLGH-------ASPLDE------PEACIYAYGCIRFLTASSAQERDDALNRNWIGLETSGE 333
            ..:..|..       |:.:|.      ||....|..|:|.|:.|....|...  ||..||     
Zfish   375 TALPALTEKVIEPFSANTVDNANTSLAPEVFCNATACLRNLSGSKLANRQSM--RNCKGL----- 432

  Fly   334 SQSLPIPALMPPALSAISTSLCPRKLTGQQTLVSRLARHGAVELMILHLQMLNEAGATKRLQGPP 398
                 |.:||....:.|:..     :...|:|.:.:.        |||                 
Zfish   433 -----IDSLMRYTENCITAG-----MPDNQSLENCVC--------ILH----------------- 462

  Fly   399 LHTLYQLSAAM-------RALADVSQ----------------QQQRLQLQLQLACPHLIRAAEVS 440
             :..|||...|       .|||..|.                |.|:|: |.....|.:.......
Zfish   463 -NLTYQLETEMPTLFNKINALASQSHNRSSSSDAGPIICFRLQSQKLK-QRGFDYPVMEDNNPEG 525

  Fly   441 MGELEVQANVVRTLSVLSED------SDCCETLHNYAARIGLLLGPSCAGGGQWSERLLAVLSRL 499
            :|.|.....:...|::||..      ..||.||.|..|..|::       ....|:.::..|:.:
Zfish   526 VGWLFHSKALQFYLNLLSSSERDATLEACCGTLQNLTANEGIV-------SNFLSQTIVQKLNGM 583

  Fly   500 GY------------------MLGNILAKHESARIQYFHNDVAMEYLLNVLEQLN---ERSPSSVA 543
            .:                  :|||:....::.::      :|.:.|..::..||   .:..||..
Zfish   584 KFITPLLQSTNPALQNSAVALLGNLSKSSQTNKV------MAPQSLPQLVGFLNSGLSKKESSPE 642

  Fly   544 HLDAQIKLIRVVANMSVN--PEVGAGLGNVRSLGAVLLQLLSKTSEELTKKKSPEQQELLHATLG 606
            :..|....:| .||..:|  |:.|..|     |...|:..|...|.....:||.:...||     
Zfish   643 YDSAMATALR-SANTLINADPDTGKNL-----LNNSLINNLYNMSLNRDLQKSSKASALL----- 696

  Fly   607 ALHNL 611
             ||||
Zfish   697 -LHNL 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32668NP_727502.1 armadillo repeat 571..611 CDD:293788 10/39 (26%)
armadillo repeat 619..665 CDD:293788
armadillo repeat 670..708 CDD:293788
pkp1bXP_001338299.2 ARM 257..364 CDD:237987 28/131 (21%)
armadillo repeat 286..322 CDD:293788 15/40 (38%)
armadillo repeat 328..362 CDD:293788 5/36 (14%)
armadillo repeat 370..415 CDD:293788 10/44 (23%)
ARM 528..652 CDD:237987 23/136 (17%)
armadillo repeat 535..561 CDD:293788 7/25 (28%)
armadillo repeat 567..609 CDD:293788 5/48 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1048
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.