DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32668 and pkp4

DIOPT Version :10

Sequence 1:NP_727502.1 Gene:CG32668 / 318147 FlyBaseID:FBgn0052668 Length:863 Species:Drosophila melanogaster
Sequence 2:XP_068078007.1 Gene:pkp4 / 561566 ZFINID:ZDB-GENE-120411-14 Length:1142 Species:Danio rerio


Alignment Length:772 Identity:151/772 - (19%)
Similarity:227/772 - (29%) Gaps:295/772 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LRRRSRSETRPQANPAEMAKQPADSDKSDRQQQLAKHHQMRHHQPHASEQSLNKLGLV--SSGTS 67
            |.|....|.:..||..|..:..|:|                   |.|:..|.::..|:  |:.:|
Zfish    51 LTRELEEERQIVANQLERCRLGAES-------------------PGAASDSSSEKSLLWRSAESS 96

  Fly    68 GMGRRKTSAELISEAKMFLGE------SVNAVPLLATGG--ARLVSTRRPITPRESGRVLYGKVA 124
            |.|..|.|....|......|:      .:..:.|..:.|  |...|:.:..:..:||   |.:|:
Zfish    97 GAGVSKPSDGCPSPTFGVRGQGSLYSPELEQISLRESEGSAANSRSSTQMNSYSDSG---YQEVS 158

  Fly   125 LAGRPPSAFSMRYLQNEKPSTPRQLPALSGSVSATP--MPTRNGALLCQSSTETLIELLKQHSGL 187
                       .|..|  ..|||:....|.|.|:.|  .||    |...|..|      .|.|..
Zfish   159 -----------GYYSN--TVTPRRSEGRSQSTSSAPSGSPT----LAMSSRAE------GQASAQ 200

  Fly   188 KDCSDETVQHINAILQE----LYTRVRKQERNYKRGFILGGLYGLVECTSPRVLLAVARVVLALR 248
            ...|...::.::::...    |||......|...| ..||..||....:.||.|.::        
Zfish   201 VGSSGRVMRRVSSVPSRAPSPLYTPSPPASRQPLR-TSLGSPYGSPIVSEPRPLPSI-------- 256

  Fly   249 VTGSNLTGACKLIFKVARHEQHDALFHEHDVLELLIDGLGHASPLDEPEACIYAYGCIRFLTASS 313
            ..|:.|                                         |.|..:|           
Zfish   257 FPGTTL-----------------------------------------PPASSHA----------- 269

  Fly   314 AQERDDALNRNWIGLETSGESQSLPIPALMPPALSA------------------ISTSLCPRKLT 360
                .|.|:.:::|...:|.......|.|:...::|                  ..:|...|...
Zfish   270 ----PDPLHSSYLGRHGNGTGSESGSPTLLRAGMTAQPQQYGTLGKHDTRAYESTHSSFGSRAYD 330

  Fly   361 GQQTLVSRLARHGAVELMILHLQMLNEAGATKRL----QGPPLHT------------LYQ----- 404
            ..:.:|  |:|..::.:..|||.:........:|    :.|..|.            |||     
Zfish   331 IFERMV--LSRPDSLTVSYLHLGLQTSYSQNSQLGQDTRSPDCHVTPIYEDRTFQNPLYQSPTHG 393

  Fly   405 -LSAAMR------ALADVSQQQQRLQLQLQLACPHLIRAAEVSMGELEVQANVVRTLSVLSEDSD 462
             .|||.|      .|...:.|...|:.|..|          .|||.:...::..|.......|| 
Zfish   394 SQSAASRNNTGFGTLQRTTSQCSTLRYQRGL----------FSMGSMATHSDTYRPGHYRQADS- 447

  Fly   463 CCETLHNYAARIGLLLGPSCAGGGQWSERLLAVLSRLGYMLGNILAKHESARIQYFHNDVAMEY- 526
                  ||                          ||....|.|.:.:  |..|...|.| ..|: 
Zfish   448 ------NY--------------------------SRHSAALDNAVTR--SPSIDSVHKD-PREFA 477

  Fly   527 -----LLNVLEQLNERSPSSVAHLDAQIKLIRVVANMSVNPEVGAGLGNVRSLGAVLLQLLSKTS 586
                 |..|:..|....||..|:..|.|:.: ...:..:..|| ..||.:|.    |:.||.   
Zfish   478 WRDPELPEVIRMLQHHFPSVQANAAAYIQHL-CYGDNRIKAEV-CRLGGIRH----LVDLLD--- 533

  Fly   587 EELTKKKSPEQQELLHATLGALHNLCFYQDKQAAVQPLAEGSLQSLIDDLSASLAKVLGNCQTSV 651
                           |.||....|.|              |:|::|                   
Zfish   534 ---------------HKTLEVQRNAC--------------GALRNL------------------- 550

  Fly   652 TKVELARVLGNLTRNEQARRCFCAAGGLPLMVQQLTKQAAGQDYELRTCAIGVLVNL 708
                   |.|..|.:.:.  |...:||:|.:|:.|.|.   .|.|:|....|||.||
Zfish   551 -------VYGKATDDNKV--CVRNSGGIPALVRLLRKT---PDSEVRELVTGVLWNL 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32668NP_727502.1 armadillo repeat 571..611 CDD:293788 7/39 (18%)
armadillo repeat 619..665 CDD:293788 5/45 (11%)
armadillo repeat 670..708 CDD:293788 13/37 (35%)
pkp4XP_068078007.1 Atrophin-1 72..>284 CDD:460830 59/321 (18%)
PHA03247 <172..269 CDD:223021 28/156 (18%)
armadillo repeat 483..508 CDD:293788 8/24 (33%)
Arm 512..551 CDD:425727 16/101 (16%)
armadillo repeat 516..552 CDD:293788 16/98 (16%)
Arm 556..597 CDD:425727 16/45 (36%)
armadillo repeat 560..595 CDD:293788 13/39 (33%)
armadillo repeat 601..653 CDD:293788
Arm 767..808 CDD:425727
armadillo repeat 771..808 CDD:293788
ARM 815..853 CDD:214547
armadillo repeat 818..852 CDD:293788
armadillo repeat 859..899 CDD:293788
armadillo repeat 905..940 CDD:293788
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.