DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mur11Da and Mmp1

DIOPT Version :9

Sequence 1:NP_727652.3 Gene:Mur11Da / 318139 FlyBaseID:FBgn0052644 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_001128002.1 Gene:Mmp1 / 300339 RGDID:1307917 Length:464 Species:Rattus norvegicus


Alignment Length:52 Identity:12/52 - (23%)
Similarity:19/52 - (36%) Gaps:0/52 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 LVDVGYYFNHRSLLVAQSQPSAYSSPIPRPSFTQNPKNIEHYDAYPSSDSYG 145
            ::|...||....:.|.:........|....||...|.::.|.||....:..|
  Rat   334 MIDQVRYFKGNKVWVVREHTVLRGFPTDIHSFFGFPSSVTHIDAAVCEEETG 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mur11DaNP_727652.3 None
Mmp1NP_001128002.1 PG_binding_1 26..84 CDD:279773
Peptidase_M10 105..259 CDD:278824
ZnMc_MMP 105..259 CDD:239805
HX 273..464 CDD:238046 12/52 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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