DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and ISL2

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_665804.1 Gene:ISL2 / 64843 HGNCID:18524 Length:359 Species:Homo sapiens


Alignment Length:304 Identity:97/304 - (31%)
Similarity:134/304 - (44%) Gaps:96/304 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNV---LERAWHASCVRCCECLQPL--TDKCFSRESKLYCRNDFFRRYGTKC 86
            |.||...|.|:|:|.|   ||  |||:|::|.||.|.|  |..||.|:.|.||:.|:.|.:|.||
Human    27 CVGCGSQIHDQFILRVSPDLE--WHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKC 89

  Fly    87 SGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGH 151
            :.|..|.:.||||.:.||.|:|:.||.|.:|.:||..|:: :.|.:::.:|:.|          |
Human    90 AKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDE-FSLREHELLCRAD----------H 143

  Fly   152 NSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDD 216
            ..|                   |...|.|    .|..|    |||                    
Human   144 GLL-------------------LERAAAG----SPRSP----GPL-------------------- 161

  Fly   217 SDQGSLDGDPDGRGDSQAENKSPDDANG-------------SKRRGPRTTIKAKQLEVLKTAFNQ 268
                     |..||     ...||..:|             .|....||.:..|||..|:|.:..
Human   162 ---------PGARG-----LHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAA 212

  Fly   269 TPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERR----MKQI 308
            .|:|...::|||.:.|||..|||:|||||||.|:::    |||:
Human   213 NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMKQL 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 26/55 (47%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 20/54 (37%)
COG5576 185..324 CDD:227863 41/141 (29%)
Homeodomain 248..304 CDD:459649 26/55 (47%)
ISL2NP_665804.1 LIM1_Isl 27..81 CDD:188752 26/55 (47%)
LIM2_Isl2 89..143 CDD:188855 21/64 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 151..191 13/81 (16%)
HOX 191..247 CDD:197696 26/55 (47%)
LIM-binding domain (LID). /evidence=ECO:0000250 272..301
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 326..359
Blue background indicates that the domain is not in the aligned region.

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