DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and LHX5

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_071758.1 Gene:LHX5 / 64211 HGNCID:14216 Length:402 Species:Homo sapiens


Alignment Length:455 Identity:194/455 - (42%)
Similarity:234/455 - (51%) Gaps:148/455 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQ 91
            ||||.:||||:||||||:||||..||:||||...|::||||||.||||:||||||:||||:||.|
Human     5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQ 69

  Fly    92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYL---------LGKAP 147
            ||:|||||||.|.||||||||||.:|.|||||||:|||:|:|||:||||||         |....
Human    70 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVS 134

  Fly   148 SCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKN 212
            ||...|||..|..:..:|..:.|                                 .|.|:|.:.
Human   135 SCTDRSLSPDLQDALQDDPKETD---------------------------------NSTSSDKET 166

  Fly   213 THDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIR 277
                                 |.|::.:..:|:|||||||||||||||.||.||..|||||||||
Human   167 ---------------------ANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR 210

  Fly   278 EQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMG--RPPFFGGARKMRGFPMNLSPGGLDD--- 337
            ||||:||||.||||||||||:|||||||||::::|  |..||...|:||  |:.   |.||:   
Human   211 EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMR--PLG---GRLDESEM 270

  Fly   338 -------------------GPGFPYFA----------ADAKF----------------------- 350
                               |..:.:||          ||:.|                       
Human   271 LGSTPYTYYGDYQGDYYAPGSNYDFFAHGPPSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHA 335

  Fly   351 ------------------EFGYGGPFHPHDGPYFPGHPGGPMPFNAP---GGPMDHSGPIPMVNE 394
                              |.|..|..||..|..|.|.|..|.|.:..   .||:.|  |.|.:||
Human   336 ADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYSGPLSH--PNPELNE 398

  Fly   395  394
            Human   399  398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 36/50 (72%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 42/54 (78%)
COG5576 185..324 CDD:227863 66/140 (47%)
Homeodomain 248..304 CDD:459649 48/55 (87%)
LHX5NP_071758.1 LIM1_Lhx1_Lhx5 5..56 CDD:188753 36/50 (72%)
LIM2_Lhx1_Lhx5 64..119 CDD:188761 42/54 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..186 21/115 (18%)
Homeodomain 181..237 CDD:459649 48/55 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..402 21/103 (20%)
PHA03378 <301..>392 CDD:223065 17/92 (18%)

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