Protein Alignment Lim1 and lhx5

DIOPT Version :9

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_001016082.1
• Gene: lhx5 / 548836
• XenbaseID: XB-GENE-490400
• Length: 402
• Species: Xenopus tropicalis
• Alignment Length: 495
• Identity: 209/495 - (42%)
• Similarity: 256/495 - (51%)
• Gaps: 113/495 - (22%)

  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQ 91
            ||||.:||||:||||||:||||..||:||||...||:||||||.||||:.|||||:||||:||..
 Frog     5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFRRFGTKCAGCSL 69

  Fly    92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSD 156
            ||:|||||||.|:||||||||||.:|.|||||||:||::|:|||:||:||       ...:||.:
 Frog    70 GISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY-------ASASSLKE 127

  Fly   157 SLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGS 221
            |.:.|.|...|....|.|:                       ..|..:|..||...:.|
 Frog   128 SSLNSVSSCTDRSLSPDLQ-----------------------DPIQDESKETDHSTSSD------ 163

  Fly   222 LDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGL 286
                     ...|.|::.:..:|:|||||||||||||||.||.||..|||||||||||||:||||
 Frog   164 ---------KETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGL 219

  Fly   287 PMRVIQVWFQNKRSKERRMKQITSMG--RPPFFGGARKMRGFPMNLSPGGLDD------GPGFPY 343
            .||||||||||:|||||||||::::|  |..||...|:||  |:.   |.||:      || :.|
 Frog   220 NMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMR--PLG---GRLDESDILSSGP-YSY 278

  Fly   344 FAADAKFEFGYGG-PFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQ- 406
            :.......:|.|. .|.||      |.|.......|....:.:|||       |.||......|
 Frog   279 YGDYQGDYYGSGNYDFFPH------GPPSSQTQSPADSSYLQNSGP-------GSTPLGPLESQL 330

  Fly   407 AGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQ 471
            :|..|.:.|........|..||.|..|..                              :.:...
 Frog   331 SGHHPSENQRYADMISHPDTPSPEPSMTG------------------------------SLHPIS 365

  Fly   472 QQQQQNGPRTNSPEFMSSAN--FSEP---QNMQ-NEGLVW 505
            .:....||   ||.|..|.|  ||.|   ||.. ||..||
 Frog   366 GEVFSGGP---SPPFSMSNNSGFSGPLPHQNPDINEATVW 402

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	36/50 (72%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	39/54 (72%)
		COG5576	185..324	CDD:227863	68/140 (49%)
		Homeobox	250..303	CDD:278475	45/52 (87%)
lhx5	NP_001016082.1	LIM1_Lhx1_Lhx5	5..56	CDD:188753	36/50 (72%)
		LIM2_Lhx1_Lhx5	64..119	CDD:188761	39/54 (72%)
		Homeobox	183..237	CDD:365835	46/53 (87%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	105	1.000	Domainoid score	I6564
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	334	1.000	Inparanoid score	I2367
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1070389at2759
OrthoFinder	1	1.000	-	-		FOG0002932
OrthoInspector	1	1.000	-	-		otm47631
Panther	1	1.100	-	-	LDO	PTHR24208
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R2608
SonicParanoid	1	1.000	-	-		X1931
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	10	10.100