Protein Alignment Lim1 and hbn

DIOPT Version :10

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_788420.1
• Gene: hbn / 47894
• FlyBaseID: FBgn0008636
• Length: 409
• Species: Drosophila melanogaster
• Alignment Length: 335
• Identity: 83/335 - (24%)
• Similarity: 106/335 - (31%)
• Gaps: 94/335 - (28%)

  Fly   201 ISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAEN--KSPDDANGSKRRGPRTTIKAKQLEVLK 263
            :.||:...||....|    |.||.|.|....|...|  ...|.....|.|..|||....||..|:
  Fly   109 LQVQAKREDSPTNTD----GGLDVDNDDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLE 169

  Fly   264 TAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPM 328
            .||.:|..|....||.||....|....:||||||:|:|.|:.::.                   |
  Fly   170 RAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKF-------------------M 215

  Fly   329 NLSPGG-LDDGPGFPYFAADAKFEFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMV 392
            |....| |....|.|        ||..|.|..||.   .|||||.                  |.
  Fly   216 NQDKAGYLLPEQGLP--------EFPLGIPLPPHG---LPGHPGS------------------MQ 251

  Fly   393 NEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMA----------------------- 434
            :||  .|....|.|...|.....:.:.|         :||||
  Fly   252 SEF--WPPHFALHQHFNPAAAAAAGLLP---------QHLMAPHYKLPNFHTLLSQYMGLSNLNG 305

  Fly   435 -----AAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSE 494
                 ||||||...|...|............|.:...:|.:.::..:..|....|.....|..:.
  Fly   306 IFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRESPKLVPHPTPPHATPPAGGNG 370

  Fly   495 PQNMQNEGLV 504
            ...:...||:
  Fly   371 GGGLLTGGLI 380

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753
		LIM2_Lhx1_Lhx5	86..141	CDD:188761
		COG5576	185..324	CDD:227863	39/124 (31%)
		Homeodomain	248..304	CDD:459649	24/55 (44%)
hbn	NP_788420.1	Homeodomain	154..210	CDD:459649	24/55 (44%)