Protein Alignment Lim1 and Dr

DIOPT Version :10

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_477324.1
• Gene: Dr / 45285
• FlyBaseID: FBgn0000492
• Length: 515
• Species: Drosophila melanogaster
• Alignment Length: 337
• Identity: 77/337 - (22%)
• Similarity: 99/337 - (29%)
• Gaps: 116/337 - (34%)

  Fly   171 PPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAE 235
            |..:..|.|...:..|..|.|:..|.|.. |...|.|....|:..:...|::.       .|...
  Fly     6 PASMTVTGLRQTMTSPTVPPSSNTPAGNL-IITSSSSNSGSNSGSNMSSGNMT-------SSNLT 62

  Fly   236 NKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRS 300
            |.||....|                     .|....||......||.:..|..:..|...|.::.
  Fly    63 NLSPSHPAG---------------------LNALASPTSPSALLLAHQQHLLQQHQQHQQQQQQQ 106

  Fly   301 KERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGGPFHPHDGPY 365
            ::....|:.::..|...  ..|......|.|...|         .||.:
  Fly   107 QQAAALQLAAVHPPAHH--LHKTTSRLSNFSVASL---------LADTR---------------- 144

  Fly   366 FPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSA- 429
                |..| |..|..||.:            ||..|     |..|..|..|.    |||||.||
  Fly   145 ----PRTP-PNQAADGPQN------------LTSSA-----ATSPISQASST----PPPPPASAA 183

  Fly   430 ----------------EHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNG 478
                            .||:.||.|||   ||..|.|..              |.|.:|||||..
  Fly   184 AQVPANTFHPAAVAHHAHLLQAAHAAA---AAHAQHQAM--------------AAQLRQQQQQAD 231

  Fly   479 PRTNSPEFMSSA 490
            .|.|||...:|:
  Fly   232 ARANSPPASTSS 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753
		LIM2_Lhx1_Lhx5	86..141	CDD:188761
		COG5576	185..324	CDD:227863	26/138 (19%)
		Homeodomain	248..304	CDD:459649	8/55 (15%)
Dr	NP_477324.1	Homeodomain	422..478	CDD:459649