DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and lhx6a

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001004015.1 Gene:lhx6a / 445565 ZFINID:ZDB-GENE-041025-1 Length:375 Species:Danio rerio


Alignment Length:369 Identity:106/369 - (28%)
Similarity:148/369 - (40%) Gaps:99/369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SEPPVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLT--DKCFSRESKLYCRNDFF 79
            |.|..| .:.||.|...|||::||.|....||..|:.|..|...|.  ..|:.:..:::|:.|:|
Zfish    88 SVPSTG-KNVCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHSSCYIKNKEIFCKMDYF 151

  Fly    80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLG 144
            .|:||||:.||:.|..||.||:.|...:||.||.|..|::||||||: :.|.:.|.:|:..|   
Zfish   152 SRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE-FGLVEEKVLCRIHY--- 212

  Fly   145 KAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTD 209
                       |:::.:..           ||...|.|:                          
Zfish   213 -----------DTMVENLK-----------RAAESGSGL-------------------------- 229

  Fly   210 SKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTR 274
                       :|:|......|||     |..|   ||  .||:..|:||:|::..|.|...|..
Zfish   230 -----------TLEGAVPSEQDSQ-----PKPA---KR--ARTSFTAEQLQVMQAQFAQDNNPDA 273

  Fly   275 HIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGP 339
            ...::||..|||..|||||||||.|:  |..|.......||        :..|....|..|.|..
Zfish   274 QTLQKLADMTGLSRRVIQVWFQNCRA--RHKKHTPQHNGPP--------QAHPQARMPPSLPDEL 328

  Fly   340 GFPYFAADAKFEF----GY--GGPFH-------PHDGPYFPGHP 370
            .:..|.:..:...    ||  ..||.       ||.....|..|
Zfish   329 HYSPFGSPERARMVALHGYIDSHPFSVLTTQSLPHQAMTLPQLP 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 17/52 (33%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 24/54 (44%)
COG5576 185..324 CDD:227863 37/138 (27%)
Homeodomain 248..304 CDD:459649 24/55 (44%)
lhx6aNP_001004015.1 LIM1_Lhx6 97..150 CDD:188766 17/52 (33%)
LIM2_Lhx6 158..212 CDD:188768 24/54 (44%)
Homeodomain 247..303 CDD:459649 27/59 (46%)

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