DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and ftz

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:331 Identity:77/331 - (23%)
Similarity:94/331 - (28%) Gaps:116/331 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 SASEDDD--DDDPPHLRATALGLGVLG---PNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQG 220
            |||||.|  |...|..:...|..|...   |..|.|. .||.......||....|.:........
  Fly   163 SASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSL-PPLEGISTPPQSPGEKSSSAVSQEINH 226

  Fly   221 SLDGDPDGRGD---SQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAK 282
            .:...|:|.||   |..|.....|...|||  .|.|....|...|:..|:.....||..|..:|.
  Fly   227 RIVTAPNGAGDFNWSHIEETLASDCKDSKR--TRQTYTRYQTLELEKEFHFNRYITRRRRIDIAN 289

  Fly   283 ETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAAD 347
            ...|..|.|::||||:|.|.::.:.                           ||..|        
  Fly   290 ALSLSERQIKIWFQNRRMKSKKDRT---------------------------LDSSP-------- 319

  Fly   348 AKFEFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPM 412
                                                :|.|.       |.|        |..||:
  Fly   320 ------------------------------------EHCGA-------GYT--------AMLPPL 333

  Fly   413 QLQS--AVGPPPPPPPPSAEHLMAAAAAA---------------AQQQAAQQQQQQQQQQQQQ-- 458
            :..|  ..|.|..|.|....|...||..|               .|||..||.....||.|.|  
  Fly   334 EATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCS 398

  Fly   459 QQQNAQ 464
            .||:.|
  Fly   399 YQQHPQ 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 36/144 (25%)
Homeodomain 248..304 CDD:459649 18/55 (33%)
ftzNP_477498.1 FTZ 1..248 CDD:397787 24/85 (28%)
Homeodomain 255..311 CDD:459649 20/57 (35%)
KLF1_2_4_N <321..404 CDD:425360 27/97 (28%)
Blue background indicates that the domain is not in the aligned region.

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