DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and Scr

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster


Alignment Length:382 Identity:88/382 - (23%)
Similarity:137/382 - (35%) Gaps:106/382 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 SCGHNSLSDSLMGSASEDDDDDDPPHLR--------ATALGLGVLG---------------PNGP 189
            |...|:.:...:.|..:....|..|.|.        |.:|..||||               .:|.
  Fly   193 SANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGS 257

  Fly   190 DSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPD-------------- 240
            ..:|||   .:::|...|....::..:||.|:..|.....|:.:   |:|.              
  Fly   258 GVSGGP---GNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGK---KNPPQIYPWMKRVHLGTS 316

  Fly   241 --DANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKER 303
              :|||..:| .||:....|...|:..|:.....||..|.::|....|..|.|::||||:|.|.:
  Fly   317 TVNANGETKR-QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 380

  Fly   304 RMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPG-FPYFAADAKFEF-GYGGPFHP-HDGPY 365
            :..::.||...|:..|.   .|.|.:    ..|..|. |.:.:| ..:.| |.| ..:. :..||
  Fly   381 KEHKMASMNIVPYHMGP---YGHPYH----QFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPY 438

  Fly   366 -----------FPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVG 419
                       :....|||:     ||.....|                 |.||||.........
  Fly   439 QTAAAASAASGYQSQDGGPI-----GGGSVGVG-----------------GGAGGPGSLANGGSN 481

  Fly   420 PPPPPPPPSAEHLMAAAAAAAQ--------QQAAQQ---QQQQQQQQQQQQQQNAQQ 465
            ...|      ..|.|:||:::|        |:. .|   :||.||||.....:|.::
  Fly   482 GSGP------NSLFASAASSSQAPDCIKYPQEFXSQVIIRQQHQQQQDNSMDRNQER 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 40/169 (24%)
Homeodomain 248..304 CDD:459649 19/55 (35%)
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 19/56 (34%)
Blue background indicates that the domain is not in the aligned region.

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