Protein Alignment Lim1 and Dfd

DIOPT Version :10

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_477201.1
• Gene: Dfd / 40832
• FlyBaseID: FBgn0000439
• Length: 586
• Species: Drosophila melanogaster
• Alignment Length: 372
• Identity: 78/372 - (20%)
• Similarity: 109/372 - (29%)
• Gaps: 167/372 - (44%)

  Fly   143 LGKAPSCGHNSLSD----SLMGSASEDDDDDDPPHLRATALGLGVLG-----------PNGPDSA 192
            :|...|.||:..|.    .|..|::|      ||  ..|||||..||           |.|..
  Fly   225 VGSTHSQGHSPHSQMMDLPLQCSSTE------PP--TNTALGLQELGLKLEKRIEEAVPAGQQ-- 279

  Fly   193 GGPLGTSDISVQSMSTDSKNTHDD---SDQGSLDGDPDGRG-----DSQAENKSPDD-------- 241
                 ..::.::....|..:.:||   .|:..||..||..|     |...::.|.:|
  Fly   280 -----LQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDG 339

  Fly   242 ----------------ANGSKRRG-----PRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETG 285
                            ||||.:.|     .||.....|:..|:..|:.....||..|.::|....
  Fly   340 ERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLV 404

  Fly   286 LPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF 350
            |..|.|::||||:|.|.::..::
  Fly   405 LSERQIKIWFQNRRMKWKKDNKL------------------------------------------ 427

  Fly   351 EFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQ 415
                                  |...|.....:|.:|
  Fly   428 ----------------------PNTKNVRKKTVDANG---------------------------- 442

  Fly   416 SAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQN 462
                    .|.|.|:.....||:..||||.||||.||||.||....|
  Fly   443 --------NPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMN 481

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753
		LIM2_Lhx1_Lhx5	86..141	CDD:188761
		COG5576	185..324	CDD:227863	38/186 (20%)
		Homeodomain	248..304	CDD:459649	19/60 (32%)
Dfd	NP_477201.1	Homeodomain	367..423	CDD:459649	18/55 (33%)