DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and lab

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster


Alignment Length:173 Identity:44/173 - (25%)
Similarity:68/173 - (39%) Gaps:28/173 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 KAPSCGHNSLSDSLM---------GSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSD 200
            |.|:.|..|:.|..|         |........:.|         :|| |.||....||.|...:
  Fly   408 KLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGP---------VGV-GGNGSPGIGGVLSVQN 462

  Fly   201 ISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTA 265
            ..:.:.|..:..:...:..|.  |...|.|.|.....|..:.:|      ||....|||..|:..
  Fly   463 SLIMANSAAAAGSAHPNGMGV--GLGSGSGLSSCSLSSNTNNSG------RTNFTNKQLTELEKE 519

  Fly   266 FNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKE-RRMKQ 307
            |:.....||..|.::|....|....:::||||:|.|: :|:|:
  Fly   520 FHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKE 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 34/124 (27%)
Homeodomain 248..304 CDD:459649 18/56 (32%)
labNP_476613.1 Homeodomain 505..558 CDD:459649 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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