Sequence 1: | NP_572505.1 | Gene: | Lim1 / 31813 | FlyBaseID: | FBgn0026411 | Length: | 505 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_729801.1 | Gene: | Lmx1a / 39406 | FlyBaseID: | FBgn0052105 | Length: | 640 | Species: | Drosophila melanogaster |
Alignment Length: | 331 | Identity: | 109/331 - (32%) |
---|---|---|---|
Similarity: | 147/331 - (44%) | Gaps: | 108/331 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 GRSEPPVGVG--------DPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESK 71
Fly 72 LYCRNDFFRRYGTKCSGCGQGIAPSDLVRKP-RDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKF 135
Fly 136 IC------KDDYLLGKAPS-CGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAG 193
Fly 194 GPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQ 258
Fly 259 LEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSK----ERRMKQITSMGRPPFFGG 319
Fly 320 ARKMRG 325 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim1 | NP_572505.1 | LIM1_Lhx1_Lhx5 | 27..78 | CDD:188753 | 23/50 (46%) |
LIM2_Lhx1_Lhx5 | 86..141 | CDD:188761 | 25/61 (41%) | ||
COG5576 | 185..324 | CDD:227863 | 42/142 (30%) | ||
Homeobox | 250..303 | CDD:278475 | 29/56 (52%) | ||
Lmx1a | NP_729801.1 | LIM1_Lmx1b | 275..327 | CDD:188757 | 24/51 (47%) |
LIM | 333..388 | CDD:295319 | 25/55 (45%) | ||
Homeobox | 427..480 | CDD:278475 | 29/52 (56%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45444993 | |
Domainoid | 1 | 1.000 | 47 | 0.796 | Domainoid score | I4515 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.940 |