Protein Alignment Lim1 and Awh

DIOPT Version :9

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_001261379.1
• Gene: Awh / 38451
• FlyBaseID: FBgn0013751
• Length: 287
• Species: Drosophila melanogaster
• Alignment Length: 353
• Identity: 105/353 - (29%)
• Similarity: 145/353 - (41%)
• Gaps: 117/353 - (33%)

  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPL--TDKCFSRESKLYCRNDFFRRYGTKCSGC 89
            ||.|.:||.|:|.|.|...:|||.|:|||.|:.||  ...||.||.::||:.|:.:.:|.|||.|
  Fly     8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKC 72

  Fly    90 GQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSL 154
            .:||:.||.||:.|:.||||.||.|..|.:|||||||..::|| :.:||..||
  Fly    73 CRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDD-RVLCKAHYL------------ 124

  Fly   155 SDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQ 219
             :::.|                                    ||:                .||:
  Fly   125 -ETVEG------------------------------------GTT----------------SSDE 136

  Fly   220 GSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKET 284
            |.     ||           |..:.||.:..|||...:||:||:..|.....|.....|::|..|
  Fly   137 GC-----DG-----------DGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVT 185

  Fly   285 GLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAK 349
            ||..||.||||||.|:::::          ....|..|:|      .|.|..       ||....
  Fly   186 GLSKRVTQVWFQNSRARQKK----------HIHAGKNKIR------EPEGSS-------FARHIN 227

  Fly   350 FEFGYGGPFHPHDGPYFPGHPGGPMPFN 377
            .:..|.          |..:...||..|
  Fly   228 LQLTYS----------FQNNAQNPMHLN 245

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	25/52 (48%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	29/54 (54%)
		COG5576	185..324	CDD:227863	35/138 (25%)
		Homeobox	250..303	CDD:278475	23/52 (44%)
Awh	NP_001261379.1	LIM1_AWH	8..61	CDD:188759	25/52 (48%)
		LIM2_AWH	69..123	CDD:188765	29/54 (54%)
		Homeobox	152..204	CDD:278475	23/51 (45%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444986
Domainoid	1	1.000	48	1.000	Domainoid score	I4481
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24208
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.940