DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and otp

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001286654.1 Gene:otp / 37364 FlyBaseID:FBgn0015524 Length:416 Species:Drosophila melanogaster


Alignment Length:419 Identity:111/419 - (26%)
Similarity:157/419 - (37%) Gaps:122/419 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 NSLSDSLMGSASEDDDDDDPPHLRATALGLGV-------LGPN----------GPDSAGGPL--G 197
            |:|..:::|     ..|.|.|....|||..||       :|||          |..|.|.|:  |
  Fly     3 NNLGANVLG-----PKDCDLPKAALTALHAGVNSFGQLPVGPNLADLGGGAGGGGSSGGVPVGGG 62

  Fly   198 TSDISVQSMSTDSKNTHDDSDQGSLDG---DPDGRGDSQAENKSPD---DANGSKRRGPRTTIKA 256
            .:.:.:.....|:.|..:..:..|.:|   :.:|.|::....:..|   |.|..||.  ||....
  Fly    63 VARLHISGGLCDNSNALNGGNGSSGNGNGNNNNGNGNNNNSMQQQDQHLDKNKQKRH--RTRFTP 125

  Fly   257 KQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGAR 321
            .||..|:..|::|..|...:||::|...||....:||||||:|:|.::.|:.|::.|        
  Fly   126 AQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQVWFQNRRAKWKKRKKTTNVFR-------- 182

  Fly   322 KMRGFPMNLSPGGLDDGPGFPYFAAD-AKFEFGYGGPFHPHDGPYFPGHPGGPM------PFNAP 379
                     :||.|....|.|.|.|: .....|        ||....|..||..      |..|.
  Fly   183 ---------TPGALLPSHGLPPFGANITNIAMG--------DGLCGTGMFGGDRWSVGVNPMTAG 230

  Fly   380 GGPMDHSGPIPMVNEFGLTP---EATFLG---------QAGGPPMQLQSAVG------------- 419
            .|.::.|.|:......||..   ..:.||         .|.|..|..|.:||             
  Fly   231 FGQLNQSSPLSSSLNSGLNSGINMGSALGAGSYQHYGLNALGDSMMYQHSVGGVSCGPSGSPSAT 295

  Fly   420 -PP---------PPP---PPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQ 471
             ||         |||   .|.|:::.:........||  ||||..|.||||..|.:.......||
  Fly   296 TPPNMNSCSSVTPPPLSAQPNSSQNELNGEPMPLHQQ--QQQQTHQHQQQQTHQHHPMAPPTPTQ 358

  Fly   472 QQQQQNGPRTNSPEFMSSANFSEPQNMQN 500
            ||||.                  ||:||:
  Fly   359 QQQQL------------------PQSMQS 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 43/156 (28%)
Homeodomain 248..304 CDD:459649 21/55 (38%)
otpNP_001286654.1 Homeodomain 117..168 CDD:459649 21/52 (40%)
Blue background indicates that the domain is not in the aligned region.

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