Protein Alignment Lim1 and ap

DIOPT Version :10

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_724428.1
• Gene: ap / 35509
• FlyBaseID: FBgn0267978
• Length: 469
• Species: Drosophila melanogaster
• Alignment Length: 315
• Identity: 103/315 - (32%)
• Similarity: 157/315 - (49%)
• Gaps: 43/315 - (13%)

  Fly     9 TSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPL--TDKCFSRESK 71
            ||...|.|:.      |.|:||.:.|.|:|.|:.:|:.|||||::|..|.|||  ...|:||:..
  Fly   136 TSDSKITRNL------DDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGN 194

  Fly    72 LYCRNDFFRRYGT-KCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKF 135
            :||:||::..:|| :||.|...|:.::||.:.|:.|||:|||.|.:|...|:.|:| |.:.|...
  Fly   195 IYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQ-YGIIDALI 258

  Fly   136 ICKDDYLLGKAPSCGHNSLSDSLMGSA--SEDDDDDDPPHL--RATALGLGVLGP-----NG-PD 190
            .|:..|.:.:......:|:|.:...||  ....:|...||.  ..:.:..|:..|     || |.
  Fly   259 YCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQ 323

  Fly   191 SA---GGP--LGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGP 250
            .|   |.|  ....||...:.:.|....:.|..:||                  ..::.|:.:..
  Fly   324 PARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRGS------------------HLSSSSRTKRM 370

  Fly   251 RTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRM 305
            ||:.|..||..:|:.|.....|.....:||:::||||.||:||||||.|:|.|||
  Fly   371 RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRM 425

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	24/52 (46%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	21/54 (39%)
		COG5576	185..324	CDD:227863	41/132 (31%)
		Homeodomain	248..304	CDD:459649	24/55 (44%)
ap	NP_724428.1	LIM1_Lhx2_Lhx9	148..201	CDD:188755	24/52 (46%)
		LIM2_Lhx2_Lhx9	206..264	CDD:188763	23/58 (40%)
		Homeodomain	368..424	CDD:459649	24/55 (44%)