DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lim1 and al

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster


Alignment Length:392 Identity:100/392 - (25%)
Similarity:142/392 - (36%) Gaps:87/392 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 MGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLD 223
            ||.:.|...::.|...:.......||....|.|:....|.:.....|:|..:.:....:..|:..
  Fly     1 MGISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPSGASGASGGTNS 65

  Fly   224 GDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPM 288
            ...||..|.:|:..:|.    .|:|..|||..:.|||.|:.||::|..|....||:||.:.||..
  Fly    66 PVSDGNSDCEADEYAPK----RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTE 126

  Fly   289 RVIQVWFQNKRSKERRMKQITSMGRP--PFF-GGARKMR---------------GFPM------- 328
            ..|||||||:|:|.|:.:::.....|  |:. |||..|:               ||.:       
  Fly   127 ARIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQ 191

  Fly   329 ---NLSPGGLDDGPGFPYFAADAKFEFGYGGPFH-------PHD--GPYFP-------------- 367
               ||:      ...:|:.:|......||...|.       ||.  |.|.|              
  Fly   192 HAANLA------AFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAV 250

  Fly   368 --GHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQS--AVGPPPPPPPP- 427
              |.|.|..|....|.|..|| |..|:.....:|       |.|...|.|.  ...||||..|| 
  Fly   251 PRGTPLGKPPALLVGSPDLHS-PNHMLASPPTSP-------ASGHASQHQQHPTAHPPPPQAPPQ 307

  Fly   428 ----------SAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNGPRTN 482
                      |.:||:..|..   |||:.....|..........:.|:.......|.....||..
  Fly   308 MPVGVQPAQLSPQHLVGIALT---QQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAA 369

  Fly   483 SP 484
            :|
  Fly   370 TP 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 45/141 (32%)
Homeodomain 248..304 CDD:459649 27/55 (49%)
alNP_722629.1 Homeodomain 86..142 CDD:459649 27/55 (49%)
OAR 374..391 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.