DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and CG11085

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster


Alignment Length:220 Identity:51/220 - (23%)
Similarity:79/220 - (35%) Gaps:42/220 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 ICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSDSLMGSASED-------------DD 167
            |.|:|  |..:|.:.:|:..|..:|           .|..||......::             |:
  Fly    17 INRRQ--TDSELELSNDDSDIDIED-----------RSTPDSTAAGCQQELLLSHHHRRFTHHDE 68

  Fly   168 DDDPPHLRAT---ALGLGVLGPNGPDSAGGPLGTSDIS-----------VQSMSTDSKNTHDDSD 218
            ......|.||   ..|.|..|..|....||.  .|.:|           :.:.:....|...|::
  Fly    69 SSVESCLSATRGPGSGTGSGGGGGGGGGGGV--ASGLSAAAAAAGVAAGLLAAAASGANGDRDAN 131

  Fly   219 QGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKE 283
            .||..|...|.....||:|.....:|.|.|..||.....||..|:..|......:...|..:|:.
  Fly   132 GGSGPGSGGGTSGGYAEHKLQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAET 196

  Fly   284 TGLPMRVIQVWFQNKRSKERRMKQI 308
            ..|....::.|:||:|:|.:|..|:
  Fly   197 LNLSETQVKTWYQNRRTKWKRQNQL 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761 7/24 (29%)
COG5576 185..324 CDD:227863 34/135 (25%)
Homeodomain 248..304 CDD:459649 15/55 (27%)
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.

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