Protein Alignment Lim1 and hoxa10b

DIOPT Version :9

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_571230.2
• Gene: hoxa10b / 30391
• ZFINID: ZDB-GENE-990415-97
• Length: 347
• Species: Danio rerio
• Alignment Length: 300
• Identity: 73/300 - (24%)
• Similarity: 115/300 - (38%)
• Gaps: 99/300 - (33%)

  Fly    53 RCCECLQP---LTDKCFS---RESKLYCRND--------------FFRRYGTKC-----SGCGQG 92
            |.|...||   :|.:.||   :|...||..:              :.|.....|     :||
Zfish   100 RSCRIEQPNNQITPRSFSPTIKEENSYCLYESEKCPKETITEDISYSRLTPNSCPSSNNNGC--- 161

  Fly    93 IAPSDLVRKPRDKVFHLN--CFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLS 155
                    .|....|.|:  |.|        |.|     ..||:.|  ..:::.:..:...:|||
Zfish   162 --------VPVPGYFRLSQTCTT--------SKG-----FTDNQTI--PTHVVAQRSTRFDSSLS 203

  Fly   156 DSLMGSASEDDDDDDPPHLRATALGLG--VLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSD 218
             ::...||. |:.|:||.....|.|..  :.|..|..|:..|..:.:.:|    |.:|
Zfish   204 -AIAAEASR-DESDEPPTCAPCAPGRNKELRGSTGTASSPEPPDSPEKAV----TVTK------- 255

  Fly   219 QGSLDGDPDGRGDSQAENKSPDDAN------GSKRRGPRTTIKAKQLEVLKT-AFNQTPKPTRHI 276
                      .|||    ||...||      |.|:|.|.|  |.:.||:.|. .||.  ..||..
Zfish   256 ----------AGDS----KSESTANWLTAKSGRKKRCPYT--KHQTLELEKEFLFNM--YLTRER 302

  Fly   277 REQLAKETGLPMRVIQVWFQNKR------SKERRMKQITS 310
            |.::::...|..|.:::||||:|      |:|.|::::::
Zfish   303 RLEISRSVHLTDRQVKIWFQNRRMKLKKMSRENRIRELSA 342

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	10/44 (23%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	13/61 (21%)
		COG5576	185..324	CDD:227863	38/138 (28%)
		Homeobox	250..303	CDD:278475	19/59 (32%)
hoxa10b	NP_571230.2	Homeobox	276..329	CDD:306543	19/56 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910