DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and Lhx9

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:XP_006249976.1 Gene:Lhx9 / 289048 RGDID:727956 Length:397 Species:Rattus norvegicus


Alignment Length:347 Identity:102/347 - (29%)
Similarity:158/347 - (45%) Gaps:75/347 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PPVGVGDP--CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDK--CFSRESKLYCRNDFF 79
            ||:....|  ||||...|.|::.|..:::.||..|::||||...|..:  ||:::..:||:.|::
  Rat    61 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYY 125

  Fly    80 RRYGT-KCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLL 143
            ||:.. :|:.|..||:.|::|.:.||.|:||:||||..|.|.|:||:. :.:.|:...|:..:  
  Rat   126 RRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDH-FGMKDSLVYCRAHF-- 187

  Fly   144 GKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATAL-------------GLGVLGPNGPDSAGGP 195
                        ::|:       ..:.||.|..|.|             |.|.:....|.....|
  Rat   188 ------------ETLL-------QGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSP 233

  Fly   196 -LGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQL 259
             ||...::..|...:::..|.|.||               :...|    ..|.:..||:.|..||
  Rat   234 ALGVDIVNYNSGCNENEADHLDRDQ---------------QPYPP----SQKTKRMRTSFKHHQL 279

  Fly   260 EVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERR--MKQITSMGRPPFFGGARK 322
            ..:|:.|.....|.....:|||::|||..||:||||||.|:|.||  ::|..        ||..|
  Rat   280 RTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQEN--------GGVDK 336

  Fly   323 MRGFPMNLSPGGLDDG----PG 340
            ..|..:. :|...|.|    ||
  Rat   337 ADGTSLP-APPSADSGALTPPG 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 19/52 (37%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 22/54 (41%)
COG5576 185..324 CDD:227863 41/141 (29%)
Homeodomain 248..304 CDD:459649 24/55 (44%)
Lhx9XP_006249976.1 LIM1_Lhx2 61..124 CDD:188853 22/62 (35%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 22/58 (38%)
Homeodomain 268..324 CDD:459649 24/55 (44%)

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