DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and LHX6

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_055183.2 Gene:LHX6 / 26468 HGNCID:21735 Length:392 Species:Homo sapiens


Alignment Length:376 Identity:107/376 - (28%)
Similarity:154/376 - (40%) Gaps:105/376 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPL--TDKCFSRESKLYCRNDFFRRYGTKCSGC 89
            |:.|...|||::||.|....||..|:.|..|...|  .:.|:.:..:::|:.|:|.|:||||:.|
Human    99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARC 163

  Fly    90 GQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSL 154
            |:.|..||.||:.|...:||.||.|..|::||||||: :.|.:.|.:|:..|             
Human   164 GRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE-FGLVEEKVLCRIHY------------- 214

  Fly   155 SDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQ 219
             |:::.:..           ||...|.|:                                    
Human   215 -DTMIENLK-----------RAAENGNGL------------------------------------ 231

  Fly   220 GSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKET 284
             :|:|......|||     |..|   ||  .||:..|:||:|::..|.|...|.....::||..|
Human   232 -TLEGAVPSEQDSQ-----PKPA---KR--ARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMT 285

  Fly   285 GLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAK 349
            ||..|||||||||.|:  |..|.......||        .|.|.:..|..|.|...:..|::..:
Human   286 GLSRRVIQVWFQNCRA--RHKKHTPQHPVPP--------SGAPPSRLPSALSDDIHYTPFSSPER 340

  Fly   350 FEF----GY------GGPFH---PHDGPYFPGHPGGPMPFNAPGGPMDHSG 387
            ...    ||      .|..|   |:..|  |.|....|     .||:.:.|
Human   341 ARMVTLHGYIESQVQCGQVHCRLPYTAP--PVHLKADM-----DGPLSNRG 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 16/52 (31%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 24/54 (44%)
COG5576 185..324 CDD:227863 37/138 (27%)
Homeodomain 248..304 CDD:459649 24/55 (44%)
LHX6NP_055183.2 LIM1_Lhx6 99..152 CDD:188766 16/52 (31%)
LIM2_Lhx6 160..214 CDD:188768 24/54 (44%)
Homeodomain 249..305 CDD:459649 27/59 (46%)

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