Sequence 1: | NP_572505.1 | Gene: | Lim1 / 31813 | FlyBaseID: | FBgn0026411 | Length: | 505 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_665887.3 | Gene: | Lhx1 / 257634 | RGDID: | 71074 | Length: | 406 | Species: | Rattus norvegicus |
Alignment Length: | 508 | Identity: | 216/508 - (42%) |
---|---|---|---|
Similarity: | 260/508 - (51%) | Gaps: | 134/508 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQ 91
Fly 92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSD 156
Fly 157 SLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGS 221
Fly 222 LDGDPDGRGDSQAENKSPDDAN-GSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETG 285
Fly 286 LPMRVIQVWFQNKRSKERRMKQITSMG--RPPFFGGARKMRGFPMNLSPGGL-DDGPGFPYFAAD 347
Fly 348 AKFEFGYGGPFH-------------PHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTP 399
Fly 400 EA---TFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQ 461
Fly 462 NAQQAANQTQQQQQQNGPRTNSPEFMS-SAN--------FSEPQNMQNEGLVW 505 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim1 | NP_572505.1 | LIM1_Lhx1_Lhx5 | 27..78 | CDD:188753 | 37/50 (74%) |
LIM2_Lhx1_Lhx5 | 86..141 | CDD:188761 | 39/54 (72%) | ||
COG5576 | 185..324 | CDD:227863 | 72/141 (51%) | ||
Homeobox | 250..303 | CDD:278475 | 45/52 (87%) | ||
Lhx1 | NP_665887.3 | LIM1_Lhx1_Lhx5 | 4..55 | CDD:188753 | 37/50 (74%) |
LIM2_Lhx1_Lhx5 | 63..118 | CDD:188761 | 39/54 (72%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 128..189 | 28/104 (27%) | |||
Homeobox | 183..237 | CDD:395001 | 46/53 (87%) | ||
dnaA | <263..>382 | CDD:237605 | 39/177 (22%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 294..372 | 24/132 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 109 | 1.000 | Domainoid score | I6228 |
eggNOG | 1 | 0.900 | - | - | E33208_3B9QY | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H4068 | |
Inparanoid | 1 | 1.050 | 339 | 1.000 | Inparanoid score | I2295 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1070389at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002932 | |
OrthoInspector | 1 | 1.000 | - | - | otm44595 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105769 | |
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1931 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.830 |