DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and Lhx1

DIOPT Version :9

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_665887.3 Gene:Lhx1 / 257634 RGDID:71074 Length:406 Species:Rattus norvegicus


Alignment Length:508 Identity:216/508 - (42%)
Similarity:260/508 - (51%) Gaps:134/508 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQ 91
            ||||.:||||:||||||:||||..||:||||...||:||||||.||||:|||||.:||||:||.|
  Rat     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQ 68

  Fly    92 GIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSD 156
            ||:||||||:.|.||||||||||.:|.|||||||:||::|:|||:||:|| |..:.....|||..
  Rat    69 GISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY-LSNSSVAKENSLHS 132

  Fly   157 SLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGS 221
            :..||        ||                                 |:|.||:   |.|...:
  Rat   133 ATTGS--------DP---------------------------------SLSPDSQ---DPSQDDA 153

  Fly   222 LDGDPDGRGDSQAENKSPDDAN-GSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETG 285
            .|.:.....|.:..:...||.| |:|||||||||||||||.||.||..|||||||||||||:|||
  Rat   154 KDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETG 218

  Fly   286 LPMRVIQVWFQNKRSKERRMKQITSMG--RPPFFGGARKMRGFPMNLSPGGL-DDGPGFPYFAAD 347
            |.||||||||||:|||||||||::::|  |..||...|:||.....|.||.| .:|| |.::...
  Rat   219 LNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGP-FSFYGDY 282

  Fly   348 AKFEFGYGGPFH-------------PHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTP 399
            ....:|.||.:.             |.|.|:.|.  .||.  ..|.|.:||  |:|     |..|
  Rat   283 QSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPS--SGPS--GTPLGGLDH--PLP-----GHHP 336

  Fly   400 EA---TFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQ 461
            .:   .|......||     ...|.|.|..|...|.|:|                          
  Rat   337 SSEAQRFTDILAHPP-----GDSPSPEPSLPGPLHSMSA-------------------------- 370

  Fly   462 NAQQAANQTQQQQQQNGPRTNSPEFMS-SAN--------FSEPQNMQNEGLVW 505
                         :..||   ||.|.| |.|        .|.|..| ||..||
  Rat   371 -------------EVFGP---SPPFSSLSVNGGASYGNHLSHPPEM-NEAAVW 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 37/50 (74%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 39/54 (72%)
COG5576 185..324 CDD:227863 72/141 (51%)
Homeobox 250..303 CDD:278475 45/52 (87%)
Lhx1NP_665887.3 LIM1_Lhx1_Lhx5 4..55 CDD:188753 37/50 (74%)
LIM2_Lhx1_Lhx5 63..118 CDD:188761 39/54 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..189 28/104 (27%)
Homeobox 183..237 CDD:395001 46/53 (87%)
dnaA <263..>382 CDD:237605 39/177 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 294..372 24/132 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6228
eggNOG 1 0.900 - - E33208_3B9QY
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4068
Inparanoid 1 1.050 339 1.000 Inparanoid score I2295
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1070389at2759
OrthoFinder 1 1.000 - - FOG0002932
OrthoInspector 1 1.000 - - otm44595
orthoMCL 1 0.900 - - OOG6_105769
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1931
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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