DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and Obox6

DIOPT Version :9

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_663756.2 Gene:Obox6 / 252830 MGIID:2149036 Length:347 Species:Mus musculus


Alignment Length:139 Identity:41/139 - (29%)
Similarity:58/139 - (41%) Gaps:30/139 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 PDSAGGPLGTSDISVQ-SMSTD------------------SKNTHDDSDQGSLDGDPDGR----G 230
            |..:.||.|.|.|.:| .:..|                  |:::.....||||  .|..|    |
Mouse    71 PQESQGPSGKSSIQMQPGLVMDPALPILRSLLMHSPHQIPSRSSVRAGFQGSL--GPMVRSPSYG 133

  Fly   231 DSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWF 295
            |.:....:|     .|.|..||....:|..|||..|::...|:|..|..||...|:....||:||
Mouse   134 DRRVSLVTP-----RKHRKIRTVYTEEQKCVLKKHFHKCTYPSREQRMALAVLVGVTANEIQIWF 193

  Fly   296 QNKRSKERR 304
            :|.|:|.:|
Mouse   194 KNHRAKSKR 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753
LIM2_Lhx1_Lhx5 86..141 CDD:188761
COG5576 185..324 CDD:227863 41/139 (29%)
Homeobox 250..303 CDD:278475 20/52 (38%)
Obox6NP_663756.2 COG5576 86..>204 CDD:227863 35/124 (28%)
homeodomain 146..204 CDD:238039 22/57 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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