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Protein Alignment Lim1 and Hoxc10
DIOPT Version :9
Sequence 1: | NP_572505.1 |
Gene: | Lim1 / 31813 |
FlyBaseID: | FBgn0026411 |
Length: | 505 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_034592.2 |
Gene: | Hoxc10 / 209448 |
MGIID: | 96192 |
Length: | 342 |
Species: | Mus musculus |
Alignment Length: | 187 |
Identity: | 52/187 - (27%) |
Similarity: | 83/187 - (44%) |
Gaps: | 26/187 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 143 LGKAPSC-GHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSM 206
|.|.|.| |.|.........||.:...: ||.:..||..|..|..|.|.......::|..:..
Mouse 158 LDKTPHCAGANEFEAPFEQRASLNPRTE---HLESPQLGGKVSFPETPKSDSQTPSPNEIKTEQS 219
Fly 207 STDSKNTHDDSDQ---GSLDGDPD-----GRGDSQAENKSPD---DANGSKRRGPRTTIKAKQLE 260
....|.:..:|:: .:.|..|| .:.:.:|||.:.: ..:|.|:|.|.| |.:.||
Mouse 220 LAGPKASPSESEKERAKTADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYT--KHQTLE 282
Fly 261 VLKT-AFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSK------ERRMKQITS 310
:.|. .||. ..||..|.:::|...|..|.:::||||:|.| |.|::::||
Mouse 283 LEKEFLFNM--YLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTS 337
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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