Protein Alignment Lim1 and ceh-14

DIOPT Version :10

• Sequence 1: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Sequence 2: NP_509273.1
• Gene: ceh-14 / 181012
• WormBaseID: WBGene00000438
• Length: 351
• Species: Caenorhabditis elegans
• Alignment Length: 443
• Identity: 130/443 - (29%)
• Similarity: 174/443 - (39%)
• Gaps: 163/443 - (36%)

  Fly    21 VGVGDP------CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF 79
            |..|.|      |:.|:|.|.|:|:..|..|.:|:||:||..|...|...||.||..:|||..|:
 Worm    36 VNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSMYCRAHFY 100

  Fly    80 RRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVL-DDNKFICKDDYLL 143
            :::|||||.|.:||.|..:|||..:.|:|:.||.|.||::.|.|||:.|:: ||.:.:|||||..
 Worm   101 KKFGTKCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQ 165

  Fly   144 GKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMST 208
            .:...|
 Worm   166 ARDKHC----------------------------------------------------------- 171

  Fly   209 DSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPT 273
                       ..|:||                  ||.:| |||||.||.||.||.|:..:.||.
 Worm   172 -----------NELEGD------------------GSNKR-PRTTISAKSLETLKQAYQTSSKPA 206

  Fly   274 RHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQ-------------------ITSM-GRPPFFG 318
            ||:|||||.||||.|||:||||||:|:||:|:|:                   |.|: |:.|.:
 Worm   207 RHVREQLASETGLDMRVVQVWFQNRRAKEKRLKKDAGRRWKSSNRAESDSNSPIESINGQSPNY- 270

  Fly   319 GARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGGPFHPH----DGPYFPGHPGGPMPFNAP 379
               .....||       |||....|.             ||..    |..|....|....|
 Worm   271 ---LYLDHPM-------DDGNESNYL-------------FHSREQTPDKYYRNETPSTDPP---- 308

  Fly   380 GGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHL 432
              ||..:.|..:...|             ..|:.|.:.|...|||......|:
 Worm   309 --PMHMTTPSVLTTNF-------------STPLSLSTNVYNLPPPESQLIPHM 346

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	22/50 (44%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	26/55 (47%)
		COG5576	185..324	CDD:227863	49/158 (31%)
		Homeodomain	248..304	CDD:459649	38/55 (69%)
ceh-14	NP_509273.1	LIM	48..103	CDD:395333	23/54 (43%)
		LIM2_Lhx3_Lhx4	107..163	CDD:188762	26/55 (47%)
		COG5576	<172..295	CDD:227863	57/165 (35%)
		Homeodomain	181..237	CDD:459649	38/56 (68%)