DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and lim-4

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_508669.1 Gene:lim-4 / 180672 WormBaseID:WBGene00002987 Length:355 Species:Caenorhabditis elegans


Alignment Length:345 Identity:88/345 - (25%)
Similarity:126/345 - (36%) Gaps:129/345 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRY--------- 82
            |..|...|.|||.|::..|.:|.:|::|..|..||::|||.::...||:..:||.:         
 Worm    98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNKCFYKDKTFYCKGCYFRTHVTSTASSCR 162

  Fly    83 --GTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGK 145
              |.||:.|.:.|..:|.||:.|:.|:||.||:|..|::||||||: |.|.:...:||..:|   
 Worm   163 ELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEE-YALQEGNLLCKQHFL--- 223

  Fly   146 APSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDS 210
                                                             .|...|..|.|....:
 Worm   224 -------------------------------------------------ELVEGDSGVSSQKAKT 239

  Fly   211 KNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRH 275
            |..                                     |||....||.||:|.||:...|...
 Worm   240 KRV-------------------------------------RTTFAEDQLSVLQTYFNRDSNPDGA 267

  Fly   276 IREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDD--- 337
            ..|::|..|||..||.||||||.|:::::..|                      .|.|...|   
 Worm   268 DLEKIASMTGLSKRVTQVWFQNSRARQKKWHQ----------------------KSEGDNGDSQR 310

  Fly   338 ---GPGFPYFAADAKFEFGY 354
               ||..|...:|:..|..|
 Worm   311 SSVGPSSPSQKSDSSSEMMY 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 19/50 (38%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 24/54 (44%)
COG5576 185..324 CDD:227863 31/138 (22%)
Homeodomain 248..304 CDD:459649 25/55 (45%)
lim-4NP_508669.1 LIM 98..153 CDD:395333 21/54 (39%)
LIM2_AWH 168..222 CDD:188765 24/54 (44%)
Homeodomain 240..296 CDD:459649 26/92 (28%)

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