DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and mec-3

DIOPT Version :9

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001023111.1 Gene:mec-3 / 177938 WormBaseID:WBGene00003167 Length:321 Species:Caenorhabditis elegans


Alignment Length:344 Identity:111/344 - (32%)
Similarity:166/344 - (48%) Gaps:73/344 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VGVG----DPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRR 81
            :||.    :.|..||:.|.|:::..:..|::|.:||:|..|..||.:|||.:..::||...:::.
 Worm    19 IGVDHENQNKCNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKD 83

  Fly    82 YGT-KCSGCGQGIAPSDLVRKPR-DKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFI--CKDDYL 142
            :.. :|:||.:|::|:|:|.|.: ..|||:.|..|.:|.:.||.|||:.| ||....  |...| 
 Worm    84 HSIHRCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILV-DDTMMTVSCMSHY- 146

  Fly   143 LGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
                                        ||.:              .|:|.|.:| |.:.:.|.|
 Worm   147 ----------------------------PPQM--------------DDNAPGAIG-SAVDIPSCS 168

  Fly   208 TDSKNTHDDSDQG-----SLDGDPDGRGDSQAENKS-----PDDANGSKRRGPRTTIKAKQLEVL 262
            |::.......|:.     .:..:.|..| ...|:.|     .||:...||||||||||..||:||
 Worm   169 TENPIAPYPIDESFSSAFQVKKEVDAYG-YNFEHYSFSDFCDDDSRMLKRRGPRTTIKQNQLDVL 232

  Fly   263 KTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGR---------PPFFG 318
            ...|:.||||::|.|.:||.||||.||||||||||:||||||:|.:.:..|         ||...
 Worm   233 NEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQNRRSKERRLKHLCNYLRHYEQRGLIPPPIHF 297

  Fly   319 GARKMRGFPMNLSPGGLDD 337
            ...:|.....|...|..::
 Worm   298 RNEEMDTTDFNAFCGNFEE 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 18/50 (36%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 23/57 (40%)
COG5576 185..324 CDD:227863 62/157 (39%)
Homeobox 250..303 CDD:278475 36/52 (69%)
mec-3NP_001023111.1 LIM 29..84 CDD:278823 18/54 (33%)
LIM 89..135 CDD:295319 20/46 (43%)
Homeobox 220..273 CDD:278475 36/52 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2834
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

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