Sequence 1: | NP_572505.1 | Gene: | Lim1 / 31813 | FlyBaseID: | FBgn0026411 | Length: | 505 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001023111.1 | Gene: | mec-3 / 177938 | WormBaseID: | WBGene00003167 | Length: | 321 | Species: | Caenorhabditis elegans |
Alignment Length: | 344 | Identity: | 111/344 - (32%) |
---|---|---|---|
Similarity: | 166/344 - (48%) | Gaps: | 73/344 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 21 VGVG----DPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRR 81
Fly 82 YGT-KCSGCGQGIAPSDLVRKPR-DKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFI--CKDDYL 142
Fly 143 LGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMS 207
Fly 208 TDSKNTHDDSDQG-----SLDGDPDGRGDSQAENKS-----PDDANGSKRRGPRTTIKAKQLEVL 262
Fly 263 KTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGR---------PPFFG 318
Fly 319 GARKMRGFPMNLSPGGLDD 337 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim1 | NP_572505.1 | LIM1_Lhx1_Lhx5 | 27..78 | CDD:188753 | 18/50 (36%) |
LIM2_Lhx1_Lhx5 | 86..141 | CDD:188761 | 23/57 (40%) | ||
COG5576 | 185..324 | CDD:227863 | 62/157 (39%) | ||
Homeobox | 250..303 | CDD:278475 | 36/52 (69%) | ||
mec-3 | NP_001023111.1 | LIM | 29..84 | CDD:278823 | 18/54 (33%) |
LIM | 89..135 | CDD:295319 | 20/46 (43%) | ||
Homeobox | 220..273 | CDD:278475 | 36/52 (69%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S2834 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.960 |