Sequence 1: | NP_572505.1 | Gene: | Lim1 / 31813 | FlyBaseID: | FBgn0026411 | Length: | 505 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_492696.1 | Gene: | lin-11 / 172893 | WormBaseID: | WBGene00003000 | Length: | 405 | Species: | Caenorhabditis elegans |
Alignment Length: | 401 | Identity: | 154/401 - (38%) |
---|---|---|---|
Similarity: | 204/401 - (50%) | Gaps: | 96/401 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 24 GDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSG 88
Fly 89 CGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLG---KAPSCG 150
Fly 151 HNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHD 215
Fly 216 DSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQL 280
Fly 281 AKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFA 345
Fly 346 ADAKFEFGYGGPFHPHDGPYFPGHPGGPMPF------NAPGGP----MDHSGPIPMVNEFGLTPE 400
Fly 401 ATFLGQAGGPP 411 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lim1 | NP_572505.1 | LIM1_Lhx1_Lhx5 | 27..78 | CDD:188753 | 23/50 (46%) |
LIM2_Lhx1_Lhx5 | 86..141 | CDD:188761 | 26/54 (48%) | ||
COG5576 | 185..324 | CDD:227863 | 71/138 (51%) | ||
Homeobox | 250..303 | CDD:278475 | 45/52 (87%) | ||
lin-11 | NP_492696.1 | LIM | 68..123 | CDD:278823 | 26/54 (48%) |
LIM2_Lhx1_Lhx5 | 127..182 | CDD:188761 | 26/54 (48%) | ||
Homeobox | 244..297 | CDD:278475 | 45/52 (87%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160165289 | |
Domainoid | 1 | 1.000 | 102 | 1.000 | Domainoid score | I4325 |
eggNOG | 1 | 0.900 | - | - | E33208_3B9QY | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 258 | 1.000 | Inparanoid score | I1936 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002932 | |
OrthoInspector | 1 | 1.000 | - | - | oto20817 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105769 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR24208 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2608 |
SonicParanoid | 1 | 1.000 | - | - | X1931 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.780 |