DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lim1 and Lmo3

DIOPT Version :10

Sequence 1:NP_572505.1 Gene:Lim1 / 31813 FlyBaseID:FBgn0026411 Length:505 Species:Drosophila melanogaster
Sequence 2:XP_036021636.1 Gene:Lmo3 / 109593 MGIID:102810 Length:172 Species:Mus musculus


Alignment Length:120 Identity:40/120 - (33%)
Similarity:73/120 - (60%) Gaps:6/120 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CAGCNKPILDKFLLNVLERAWHASCVR--CCEC-LQPLTDKCFSRESKLYCRNDFFRRYGT--KC 86
            |||||:.|.|::||..|::.||..|::  ||:| |..:....:::.:.:.||.|:.|.:|.  .|
Mouse    40 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNC 104

  Fly    87 SGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
            :.|.:.|...::|.:.:|.|:||:||.|.:|.::...|::.: |.:|..:|:.||
Mouse   105 AACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFF-LKNNMILCQTDY 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lim1NP_572505.1 LIM1_Lhx1_Lhx5 27..78 CDD:188753 19/53 (36%)
LIM2_Lhx1_Lhx5 86..141 CDD:188761 16/54 (30%)
COG5576 185..324 CDD:227863
Homeodomain 248..304 CDD:459649
Lmo3XP_036021636.1 LIM1_LMO1_LMO3 40..94 CDD:188774 19/53 (36%)
LIM2_LMO1_LMO3 104..158 CDD:188775 16/54 (30%)
Blue background indicates that the domain is not in the aligned region.

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