DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HNRNPA2B1 and lark

DIOPT Version :10

Sequence 1:NP_112533.1 Gene:HNRNPA2B1 / 3181 HGNCID:5033 Length:353 Species:Homo sapiens
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:258 Identity:62/258 - (24%)
Similarity:106/258 - (41%) Gaps:61/258 - (23%)


- Green bases have known domain annotations that are detailed below.


Human    22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE-VDAAMAARPHS 85
            |||||.|..:|....||..:|::|.:.:|.|:::        :|||...:..: .||......::
  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGYT 64

Human    86 IDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG 150
            ::...::.:.|.:|.....|     ..|:|||.:.:.|....:|:.|::||.:...:|:      
  Fly    65 LNEFAIKVEAAKSRRAPNTP-----TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV------ 118

Human   151 KKRGFGFVTFD-DHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ-----EVQSSRSGRGGNFG- 208
              |.:|||..| ..|..|.|.......::|...:|:.:.||...:     ..|..|.||.|::. 
  Fly   119 --RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSK 181

Human   209 -----FGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFG-------------------DGYNGY 247
                 :|.:  |||...|.|.|     :.|| ..|.:|                   ||:..|
  Fly   182 ECPRLYGSA--GGGREPPSPLS-----AGGY-RDRMYGRDPYPPPPPPPPFLRDRIMDGFRDY 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPA2B1NP_112533.1 Nuclear localization signal. /evidence=ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155 19/77 (25%)
RRM2_hnRNPA2B1 112..191 CDD:409995 21/79 (27%)
Disordered. /evidence=ECO:0000269|PubMed:26544936 193..353 19/85 (22%)
HnRNPA1 302..326 CDD:463312
Nuclear targeting sequence. /evidence=ECO:0000250 308..347
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 18/72 (25%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/72 (26%)
hnRNP-R-Q <88..>258 CDD:273732 40/165 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.