DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPA2B1 and hrpa-1

DIOPT Version :10

Sequence 1:NP_112533.1 Gene:HNRNPA2B1 / 3181 HGNCID:5033 Length:353 Species:Homo sapiens
Sequence 2:NP_001040945.1 Gene:hrpa-1 / 177101 WormBaseID:WBGene00001999 Length:347 Species:Caenorhabditis elegans


Alignment Length:352 Identity:164/352 - (46%)
Similarity:211/352 - (59%) Gaps:53/352 - (15%)


- Green bases have known domain annotations that are detailed below.


Human    16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
            |.|..||:|:|||:..||::.:|.:|.|:|::||.:|||||.:||||||||||||...||||||.
 Worm    18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82

Human    81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIIT 145
            .|||.|||:.|:|||||.|::..:..::|:.|:|:|.|::||..|..|.:||.:||.:...|||.
 Worm    83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIIL 147

Human   146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQ-----SSRSGR-- 203
            |:.:.|.||||||||||||.||:.||||.|.:|||..:|||.||:.||.:.|     .:|.||  
 Worm   148 DKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGGRSR 212

Human   204 -GGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGY--GGG 265
             |...|:....||||.:| ||..  |||...||...|.|.|  ||    ||||:||..|.  |||
 Worm   213 DGQRGGYNGGGGGGGGWG-GPAQ--RGGPGAYGGPGGGGQG--GY----GGGNYGGGWGQQGGGG 268

Human   266 RGGYGG-----GGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
            :||:||     ||.|:|.||||..||:                |...||       :.|.:||.:
 Worm   269 QGGWGGPQQQQGGGGWGQQGGGGQGGW----------------GGPQQQ-------QQGGWGGPQ 310

Human   326 NMGGPYGGGNYGPGGSG-GSGGYGGRS 351
            .     |||..|.||.| ..||:||:|
 Worm   311 Q-----GGGGGGWGGQGQQQGGWGGQS 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPA2B1NP_112533.1 Nuclear localization signal. /evidence=ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155 49/79 (62%)
RRM2_hnRNPA2B1 112..191 CDD:409995 44/78 (56%)
Disordered. /evidence=ECO:0000269|PubMed:26544936 193..353 66/175 (38%)
HnRNPA1 302..326 CDD:463312 6/23 (26%)
Nuclear targeting sequence. /evidence=ECO:0000250 308..347 13/39 (33%)
hrpa-1NP_001040945.1 RRM_SF 24..101 CDD:473069 48/76 (63%)
RRM2_hnRNPA_like 115..187 CDD:409766 38/71 (54%)
Blue background indicates that the domain is not in the aligned region.

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