DRSC/TRiP Functional Genomics Resources

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Protein Alignment sordd2 and pas4

DIOPT Version :10

Sequence 1:NP_727898.2 Gene:sordd2 / 318098 FlyBaseID:FBgn0052581 Length:283 Species:Drosophila melanogaster
Sequence 2:NP_595592.1 Gene:pas4 / 2539774 PomBaseID:SPBC17A3.10 Length:306 Species:Schizosaccharomyces pombe


Alignment Length:163 Identity:40/163 - (24%)
Similarity:67/163 - (41%) Gaps:29/163 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESSTSQLRPLGTSIPTNSTASELKKSNTSYSF 79
            |..|..::.|.|...:.|..:    |...|..::...:.|..||:.:    .||.|:.|| ||..
pombe   172 TMKGHCATVSQLLLGLKYISL----DEINPEEKKKVLTLLLLLGSRL----IASILQHSN-SYFD 227

  Fly    80 TGDYLSGGNKADLKGGYPFGGTDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLF 144
            .....|..::.||                 :||.|.....:...:|::|::.......:.|||:|
pombe   228 QHTISSITDERDL-----------------EDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIF 275

  Fly   145 CWPCLHQWLLTRPNRKLCPVCKAAVDKDKVIPL 177
            ||.|::.|   ...:..||:|:|.....|:|.|
pombe   276 CWSCINGW---TSKKSECPLCRAFSSPSKIILL 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sordd2NP_727898.2 RING-HC_RNF185 123..179 CDD:438402 17/55 (31%)
pas4NP_595592.1 PEX10 1..306 CDD:227861 40/163 (25%)

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