DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2004 and nhr-246

DIOPT Version :9

Sequence 1:NP_001259353.1 Gene:CG2004 / 31809 FlyBaseID:FBgn0030060 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001256661.1 Gene:nhr-246 / 191499 WormBaseID:WBGene00014192 Length:386 Species:Caenorhabditis elegans


Alignment Length:377 Identity:83/377 - (22%)
Similarity:134/377 - (35%) Gaps:111/377 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 DEKQLEISVIVKAMPDNLHR-----------RRLFRSVI--FFRN-EINFYTKVLPAIEAFQKSR 116
            |...|...|::| :|.|...           :.:..||:  |..| |.|:| |:..::.      
 Worm    55 DNDDLPKHVVLK-IPQNTKGCSVVENAGGGVKNVDHSVVERFMHNTECNYY-KLFSSLS------ 111

  Fly   117 QPAPKKPFVEYPRCLASLCDGVNDFIALEDVGPRGYRAPVRQDYIS-LEDALLTMRTLGRFHGVA 180
                :||.......|||               ..|.:|||....:. |||.        :.|.:.
 Worm   112 ----EKPLQIPTTYLAS---------------KAGEKAPVPVIVLEMLEDC--------KLHDLI 149

  Fly   181 LAFNALDSKNFEKAAGSLEETYYGEHTREW-----------YTGFL---------LLAENVATDA 225
            ..||  :.:.|:.....::...:...|.:|           .:|||         .||:|.....
 Worm   150 PGFN--EDQLFKIVDELVKLHIFSLTTEKWKEIVPDESKLAMSGFLQCMVADVGRKLAQNPELGV 212

  Fly   226 VKQIYPNSKYETVAT--NFLQPPLFDDLINLVSTRSKLSVFGHGDCWTPNFLTKYNERGQSEEII 288
            :.....|    |:.|  |:|| .:.|:.||    ..:.||..|||.|.|..|      ...|:.|
 Worm   213 ILSYVEN----TLDTDPNYLQ-KMRDEYIN----EERPSVICHGDLWAPQIL------WDKEDNI 262

  Fly   289 --IIDFQLARCSSLALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQDLGGNAESIISWES 351
              |:|:|.....|...||...:.:|||.:.|:.....||..|....:..:::.|...    :|  
 Worm   263 AGIVDWQATHRGSPMEDLHHILSTCTSVQNRKTFTKPLLDHYYNKLKVGLKEKGFKT----TW-- 321

  Fly   352 LQEELK---NFG--------RFGCGMGIESLPMTMMEDDEVADLDGIKENAI 392
            .:||:.   |:.        .|..|....|   .:::.|...|.:.|||:.:
 Worm   322 TREEIDIEYNYSFIYGASRTIFANGFWANS---PVLQTDGKPDPERIKESFV 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2004NP_001259353.1 EcKinase 42..340 CDD:281023 70/312 (22%)
nhr-246NP_001256661.1 CHK 134..314 CDD:214734 47/204 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I6679
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 52 1.000 Inparanoid score I4089
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D433354at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.970

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