DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11294 and Lmx1a

DIOPT Version :10

Sequence 1:NP_572500.1 Gene:CG11294 / 31807 FlyBaseID:FBgn0030058 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:142 Identity:43/142 - (30%)
Similarity:62/142 - (43%) Gaps:18/142 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GRRRQRRNRTTFTPQQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAKWRKQAR 84
            |||..:|.||..|.||.::.:|.|.::..|...:||.:|....||...|||||||:|||.:|..|
  Fly   420 GRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 484

  Fly    85 LQLLQDAWRMRCLSLGTPPVMGGGAVQGGSGNGATARPPSQTPENLSSASKDSELAEVGNGPNSG 149
                              .....|...||||:|......|.|.:..::..:|..:.:...|.:||
  Fly   485 ------------------KAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDKCVKQELGGDSSG 531

  Fly   150 SFTMMHPAFQQQ 161
            ....:...|..|
  Fly   532 YLGGLDSTFASQ 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11294NP_572500.1 Homeodomain 29..81 CDD:459649 22/51 (43%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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