Protein Alignment ldd and alsA

DIOPT Version :10

• Sequence 1: NP_001285513.1
• Gene: ldd / 318066
• FlyBaseID: FBgn0083956
• Length: 1998
• Species: Drosophila melanogaster
• Sequence 2: NP_418511.1
• Gene: alsA / 948593
• ECOCYCID: EG11959
• Length: 510
• Species: Escherichia coli
• Alignment Length: 350
• Identity: 92/350 - (26%)
• Similarity: 145/350 - (41%)
• Gaps: 72/350 - (20%)

  Fly  1665 YAVRNVNFSVQRGECFGLLGKNGAGKSTIFKLLTGQLQPDVGQIYFEQPGISYCPQSNPLDPLLT 1729
            :|:::||.:|..||...|||:|||||||:.|:|:|..:|..|.|...  .|||    |.||..|.
E. coli    19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN--NISY----NKLDHKLA 77

  Fly  1730 TTECIR-FYGRLRGIRDL----DQFLDR----------VLDTYELRPYK-------------DVQ 1766
            ....|. .|..|..|.:|    :.::.|          ::|..|:|...             |.:
E. coli    78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVDLDEK 142

  Fly  1767 VRNLSGGNRRKLTVAVTCCGCTPTVLMDEPTSDMDPVTRDMVYATIEQLLLARRAVVLTSHSVSE 1831
            |.|||..:::.|.:|.|.......::||||||.:.....|.::..:.||.....|:|..||.::|
E. coli   143 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE 207

  Fly  1832 IEHLCQRVAVLRAGQVIASDSPQRLKSEHGGYYAVTCFCGPAQQAILSRSLNQRLPGARD-LQHY 1895
            |..:|.|..|::.|..:.|.....:.::            ...:.::.|.|..|....:: :.:.
E. coli   208 IRRICDRYTVMKDGSSVCSGIVSDVSND------------DIVRLMVGRELQNRFNAMKENVSNL 260

  Fly  1896 AHSLRFLVR-VRSPGSLGDAPLLSELFAILCDVCVNVARFSLSRCRFETV-FERILDSSESNGSN 1958
            ||...|.|| |.|...                  ..|...|.|.||.|.: |..::.|..:...|
E. coli   261 AHETVFEVRNVTSRDR------------------KKVRDISFSVCRGEILGFAGLVGSGRTELMN 307

  Fly  1959 ---GVHKDQQQQVAKN--DLPSKSP 1978
               ||.|....::..|  |:..:||
E. coli   308 CLFGVDKRAGGEIRLNGKDISPRSP 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ldd	NP_001285513.1	rim_protein	179..1867	CDD:130324	66/229 (29%)
alsA	NP_418511.1	PRK09700	1..510	CDD:182036	91/349 (26%)